Home LiteratureArticle Details

PMID: 16387866 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S.

Predicting chromosomal locations of genetically mapped loci in maize using the Morgan2McClintock Translator.

Genetics ·Vol. 172 ·No. 3 ·2006-03-00 ·Pages 2007-9

Lawrence CJ, Seigfried TE, Bass HW, Anderson LK

Abstract

The Morgan2McClintock Translator permits prediction of meiotic pachytene chromosome map positions from recombination-based linkage data using recombination nodule frequency distributions. Its outputs permit estimation of DNA content between mapped loci and help to create an integrated overview of the maize nuclear genome structure.

MeSH Terms

Computational Biology/methods Genetic Markers Genome, Plant Physical Chromosome Mapping/methods Predictive Value of Tests Software Zea mays/genetics

Chemicals

Genetic Markers

Authors & Affiliations

4 authors, click to expand affiliations / ORCID

Lawrence Carolyn J

USDA-ARS, Corn Insect and Crop Genetics Research Unit, Iowa State University, Ames 50011, USA. [email protected]

Seigfried Trent E

Bass Hank W

Anderson Lorinda K

References (13)

13 references, click to expand

Comparison between genetic and physical maps in Zea mays L. of molecular markers linked to resistance against Diatraea spp.
Theor Appl Genet. 2002 May;104(6-7):908-915 PMID: 12582595
Uneven distribution of expressed sequence tag loci on maize pachytene chromosomes.
Genome Res. 2006 Jan;16(1):115-22 PMID: 16339046
High-resolution crossover maps for each bivalent of Zea mays using recombination nodules.
Genetics. 2003 Oct;165(2):849-65 PMID: 14573493
Comparative plant genomics resources at PlantGDB.
Plant Physiol. 2005 Oct;139(2):610-8 PMID: 16219921
Maintaining collections of mutants for plant functional genomics.
Methods Mol Biol. 2003;236:311-26 PMID: 14501073
Two-dimensional spreads of synaptonemal complexes from solanaceous plants. VI. High-resolution recombination nodule map for tomato (Lycopersicon esculentum).
Genetics. 1995 Oct;141(2):683-708 PMID: 8647403
FPC Web tools for rice, maize, and distribution.
Plant Physiol. 2005 May;138(1):116-26 PMID: 15888684
Male mouse recombination maps for each autosome identified by chromosome painting.
Am J Hum Genet. 2002 Dec;71(6):1353-68 PMID: 12432495
The maize genetics and genomics database. The community resource for access to diverse maize data.
Plant Physiol. 2005 May;138(1):55-8 PMID: 15888678
A new single-locus cytogenetic mapping system for maize (Zea mays L.): overcoming FISH detection limits with marker-selected sorghum (S. propinquum L.) BAC clones.
Plant J. 2003 Sep;35(5):647-59 PMID: 12940957
A maize map standard with sequenced core markers, grass genome reference points and 932 expressed sequence tagged sites (ESTs) in a 1736-locus map.
Genetics. 1999 Jul;152(3):1137-72 PMID: 10388831
Integrating genetic linkage maps with pachytene chromosome structure in maize.
Genetics. 2004 Apr;166(4):1923-33 PMID: 15126409
Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes.
Proc Natl Acad Sci U S A. 2005 Aug 23;102(34):12282-7 PMID: 16103354

Article Info

Journal

Genetics

Abbr.

Genetics

ISSN

0016-6731

DOI

10.1534/genetics.105.054155

[email protected]

Published

2006-03-00

Epub

2005-00-30

Pages

2007-9

Language

English

Region

United States

NLM ID

0374636

PMCID

PMC1456272

Subset

External Links

PubMed source DOI: 10.1534/genetics.105.054155 PMC Full Text View journal details

Analysis Services

Predicting chromosomal locations of genetically mapped loci in maize using the Morgan2McClintock Translator.

Contact

WeChat Official Account