Abstract
Genome-wide RNA interference (RNAi) screening is a very powerful tool for analyzing gene function in vivo in Caenorhabditis elegans. The effectiveness of RNAi varies from gene to gene, however, and neuronally expressed genes are largely refractive to RNAi in wild-type worms. We found that C. elegans strains carrying mutations in lin-35, the worm ortholog of the tumor suppressor gene p105Rb, or a subset of the genetically related synMuv B family of chromatin-modifying genes, show increased strength and penetrance for many germline, embryonic, and post-embryonic RNAi phenotypes, including neuronal RNAi phenotypes. Mutations in these same genes also enhance somatic transgene silencing via an RNAi-dependent mechanism. Two genes, mes-4 and zfp-1, are required both for the vulval lineage defects resulting from mutations in synMuv B genes and for RNAi, suggesting a common mechanism for the function of synMuv B genes in vulval development and in regulating RNAi. Enhanced RNAi in the germline of lin-35 worms suggests that misexpression of germline genes in somatic cells cannot alone account for the enhanced RNAi observed in this strain. A worm strain with a null mutation in lin-35 is more sensitive to RNAi than any other previously described single mutant strain, and so will prove very useful for future genome-wide RNAi screens, particularly for identifying genes with neuronal functions. As lin-35 is the worm ortholog of the mammalian tumor suppressor gene p105Rb, misregulation of RNAi may be important during human oncogenesis.
MeSH Terms
Animals
Caenorhabditis elegans/anatomy & histology,genetics,metabolism
Caenorhabditis elegans Proteins/chemistry,genetics,metabolism
Cell Lineage
Gene Silencing
Genes, Helminth
Models, Genetic
Mutation/genetics
Nervous System/metabolism
Phenotype
RNA Interference
Repressor Proteins/chemistry,genetics,metabolism
Retinoblastoma Protein/chemistry
Suppression, Genetic
Chemicals
Caenorhabditis elegans Proteins
Repressor Proteins
Retinoblastoma Protein
lin-35 protein, C elegans
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Lehner Ben
The Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
Calixto Andrea
Crombie Catriona
Tischler Julia
Fortunato Angelo
Chalfie Martin
Fraser Andrew G
References (30)
30 references, click to expand
-
A conserved siRNA-degrading RNase negatively regulates RNA interference in C. elegans.
Nature. 2004 Feb 12;427(6975):645-9
PMID: 14961122
-
Systematic functional analysis of the Caenorhabditis elegans genome using RNAi.
Nature. 2003 Jan 16;421(6920):231-7
PMID: 12529635
-
Molecular mechanisms of E2F-dependent activation and pRB-mediated repression.
J Cell Sci. 2004 May 1;117(Pt 11):2173-81
PMID: 15126619
-
Technique review: how to use RNA interference.
Brief Funct Genomic Proteomic. 2004 Apr;3(1):68-83
PMID: 15163361
-
The coordinate regulation of pharyngeal development in C. elegans by lin-35/Rb, pha-1, and ubc-18.
Dev Biol. 2004 Jul 1;271(1):11-25
PMID: 15196946
-
Revealing the world of RNA interference.
Nature. 2004 Sep 16;431(7006):338-42
PMID: 15372040
-
Native E2F/RBF complexes contain Myb-interacting proteins and repress transcription of developmentally controlled E2F target genes.
Cell. 2004 Oct 15;119(2):181-93
PMID: 15479636
-
Developmental genetics of the mechanosensory neurons of Caenorhabditis elegans.
Dev Biol. 1981 Mar;82(2):358-70
PMID: 7227647
-
glp-1 is required in the germ line for regulation of the decision between mitosis and meiosis in C. elegans.
Cell. 1987 Nov 20;51(4):589-99
PMID: 3677168
-
Genetic control of differentiation of the Caenorhabditis elegans touch receptor neurons.
Science. 1989 Feb 24;243(4894 Pt 1):1027-33
PMID: 2646709
-
A novel class of zinc finger/leucine zipper genes identified from the molecular cloning of the t(10;11) translocation in acute leukemia.
Blood. 1995 Mar 15;85(6):1435-41
PMID: 7888665
-
Three genes of the MAP kinase cascade, mek-2, mpk-1/sur-1 and let-60 ras, are required for meiotic cell cycle progression in Caenorhabditis elegans.
Development. 1995 Aug;121(8):2525-35
PMID: 7671816
-
Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.
Nature. 1998 Feb 19;391(6669):806-11
PMID: 9486653
-
lin-35 and lin-53, two genes that antagonize a C. elegans Ras pathway, encode proteins similar to Rb and its binding protein RbAp48.
Cell. 1998 Dec 23;95(7):981-91
PMID: 9875852
-
Identification of a Drosophila Myb-E2F2/RBF transcriptional repressor complex.
Genes Dev. 2004 Dec 1;18(23):2929-40
PMID: 15545624
-
synMuv verite--Myb comes into focus.
Genes Dev. 2004 Dec 1;18(23):2837-44
PMID: 15574590
-
Functional genomic analysis of RNA interference in C. elegans.
Science. 2005 May 20;308(5725):1164-7
PMID: 15790806
-
Chromatin regulation and sumoylation in the inhibition of Ras-induced vulval development in Caenorhabditis elegans.
EMBO J. 2005 Jul 20;24(14):2613-23
PMID: 15990876
-
Systematic analysis of genes required for synapse structure and function.
Nature. 2005 Jul 28;436(7050):510-7
PMID: 16049479
-
Somatic misexpression of germline P granules and enhanced RNA interference in retinoblastoma pathway mutants.
Nature. 2005 Jul 28;436(7050):593-7
PMID: 16049496
-
The RING finger/B-box factor TAM-1 and a retinoblastoma-like protein LIN-35 modulate context-dependent gene silencing in Caenorhabditis elegans.
Genes Dev. 1999 Nov 15;13(22):2958-70
PMID: 10580003
-
The C. elegans E2F- and DP-related proteins are required for embryonic asymmetry and negatively regulate Ras/MAPK signaling.
Mol Cell. 2001 Mar;7(3):451-60
PMID: 11463371
-
dpl-1 DP and efl-1 E2F act with lin-35 Rb to antagonize Ras signaling in C. elegans vulval development.
Mol Cell. 2001 Mar;7(3):461-73
PMID: 11463372
-
Using RNA interference to identify genes required for RNA interference.
Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4191-6
PMID: 11904378
-
C. elegans class B synthetic multivulva genes act in G(1) regulation.
Curr Biol. 2002 Jun 4;12(11):906-11
PMID: 12062054
-
Identification of genes expressed in C. elegans touch receptor neurons.
Nature. 2002 Jul 18;418(6895):331-5
PMID: 12124626
-
Loss of the putative RNA-directed RNA polymerase RRF-3 makes C. elegans hypersensitive to RNAi.
Curr Biol. 2002 Aug 6;12(15):1317-9
PMID: 12176360
-
MTD-1, a touch-cell-specific membrane protein with a subtle effect on touch sensitivity.
Mech Dev. 2002 Nov;119(1):3-7
PMID: 12385749
-
A component of the transcriptional mediator complex inhibits RAS-dependent vulval fate specification in C. elegans.
Development. 2003 Jan;130(1):57-69
PMID: 12441291
-
Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals novel gene functions.
PLoS Biol. 2003 Oct;1(1):E12
PMID: 14551910