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PMID: 16607015 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

High-mobility-group box nuclear factors of Plasmodium falciparum.

Eukaryotic cell ·Vol. 5 ·No. 4 ·2006-04-00 ·Pages 672-82

Briquet S, Boschet C, Gissot M, Tissandié E, Sevilla E, Franetich JF, Thiery I, Hamid Z, Bourgouin C, Vaquero C

Abstract

In eukaryotes, the high-mobility-group (HMG) nuclear factors are highly conserved throughout evolution and are divided into three families, including HGMB, characterized by an HMG box domain. Some HMGB factors are DNA structure specific and preferentially interact with distorted DNA sequences, trigger DNA bending, and hence facilitate the binding of nucleoprotein complexes that in turn activate or repress transcription. In Plasmodium falciparum, two HMGB factors were predicted: PfHMGB1 and PfHMGB2. They are small proteins, under 100 amino acids long, encompassing a characteristic HMG box domain closely related to box B of metazoan factors, which comprises two HMG box domains, A and B, in tandem. Computational analyses supported the conclusion that the Plasmodium proteins were genuine architectural HMGB factors, and in vitro analyses performed with both recombinant proteins established that they were able to interact with distorted DNA structures and bend linear DNA with different affinities. These proteins were detected in both asexual- and gametocyte-stage cells in Western blotting experiments and mainly in the parasite nuclei. PfHMGB1 is preferentially expressed in asexual erythrocytic stages and PfHMGB2 in gametocytes, in good correlation with transcript levels of expression. Finally, immunofluorescence studies revealed differential subcellular localizations: both factors were observed in the nucleus of asexual- and sexual-stage cells, and PfHMGB2 was also detected in the cytoplasm of gametocytes. In conclusion, in light of differences in their levels of expression, subcellular localizations, and capacities for binding and bending DNA, these factors are likely to play nonredundant roles in transcriptional regulation of Plasmodium development in erythrocytes.

MeSH Terms
Amino Acid Sequence Animals Computational Biology DNA/metabolism Erythrocytes/parasitology HMGB Proteins/classification,genetics,metabolism Humans Life Cycle Stages Molecular Sequence Data Plasmodium falciparum/genetics,growth & development,metabolism Regulatory Elements, Transcriptional Sequence Alignment
Chemicals
HMGB Proteins DNA
Authors & Affiliations
10 authors, click to expand affiliations / ORCID
Briquet Sylvie
INSERM, U511, Université Pierre et Marie Curie, Paris VI, Centre Hospitalo-Universitaire de la Pitié-Salpêtrière, 91 boulevard de l'Hôpital, 75013 Paris, France. [email protected]
Boschet Charlotte
Gissot Mathieu
Tissandié Emilie
Sevilla Elisa
Franetich Jean-François
Thiery Isabelle
Hamid Zuhal
Bourgouin Catherine
Vaquero Catherine
References (67)
67 references, click to expand
  1. The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognition.
    EMBO J. 1999 Dec 1;18(23):6610-8 PMID: 10581235
  2. Structural basis for the proinflammatory cytokine activity of high mobility group box 1.
    Mol Med. 2003 Jan-Feb;9(1-2):37-45 PMID: 12765338
  3. Incremental threading optimization (TITO) to help alignment and modelling of remote homologues.
    Bioinformatics. 1998;14(2):206-11 PMID: 9545453
  4. An enlarged largest subunit of Plasmodium falciparum RNA polymerase II defines conserved and variable RNA polymerase domains.
    Nucleic Acids Res. 1989 Dec 11;17(23):9621-36 PMID: 2690004
  5. Solution structure of the HMG protein NHP6A and its interaction with DNA reveals the structural determinants for non-sequence-specific binding.
    EMBO J. 1999 May 4;18(9):2563-79 PMID: 10228169
  6. Rice HMGB1 protein recognizes DNA structures and bends DNA efficiently.
    Arch Biochem Biophys. 2003 Mar 1;411(1):105-11 PMID: 12590928
  7. Isolation of a novel Plasmodium falciparum gene encoding a protein homologous to the Tat-binding protein family.
    Eur J Biochem. 1994 Dec 1;226(2):673-80 PMID: 8001584
  8. The transcription machinery and the molecular toolbox to control gene expression in Toxoplasma gondii and other protozoan parasites.
    Microbes Infect. 2005 Oct;7(13):1376-84 PMID: 16087378
  9. Diversification pattern of the HMG and SOX family members during evolution.
    J Mol Evol. 1999 May;48(5):517-27 PMID: 10198118
  10. PfMyb1, a Plasmodium falciparum transcription factor, is required for intra-erythrocytic growth and controls key genes for cell cycle regulation.
    J Mol Biol. 2005 Feb 11;346(1):29-42 PMID: 15663925
  11. Reduced extension temperatures required for PCR amplification of extremely A+T-rich DNA.
    Nucleic Acids Res. 1996 Apr 15;24(8):1574-5 PMID: 8628694
  12. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
    Nucleic Acids Res. 1994 Nov 11;22(22):4673-80 PMID: 7984417
  13. Molecular biology. Chromatin higher order folding--wrapping up transcription.
    Science. 2002 Sep 13;297(5588):1824-7 PMID: 12228709
  14. HMG-D and histone H1 alter the local accessibility of nucleosomal DNA.
    Nucleic Acids Res. 2003 Dec 15;31(24):7083-9 PMID: 14654683
  15. Structure of the HMG box motif in the B-domain of HMG1.
    EMBO J. 1993 Apr;12(4):1311-9 PMID: 8467791
  16. The HMG-1 box protein family: classification and functional relationships.
    Nucleic Acids Res. 1995 May 11;23(9):1604-13 PMID: 7784217
  17. Characterisation of the gene encoding an unusually divergent TATA-binding protein (TBP) from the extremely A+T-rich human malaria parasite Plasmodium falciparum.
    Gene. 1993 Feb 28;124(2):165-71 PMID: 8444340
  18. HMG-1 as a late mediator of endotoxin lethality in mice.
    Science. 1999 Jul 9;285(5425):248-51 PMID: 10398600
  19. Control of gene expression in Plasmodium falciparum.
    Mol Biochem Parasitol. 1998 Sep 15;95(2):171-81 PMID: 9803410
  20. Specific recognition of cruciform DNA by nuclear protein HMG1.
    Science. 1989 Feb 24;243(4894 Pt 1):1056-9 PMID: 2922595
  21. Discovery of gene function by expression profiling of the malaria parasite life cycle.
    Science. 2003 Sep 12;301(5639):1503-8 PMID: 12893887
  22. A Plasmodium falciparum gene encoding a high mobility group protein box.
    Mol Biochem Parasitol. 1995 May;71(2):249-53 PMID: 7477107
  23. Determinants of DNA binding and bending by the Saccharomyces cerevisiae high mobility group protein NHP6A that are important for its biological activities. Role of the unique N terminus and putative intercalating methionine.
    J Biol Chem. 1998 Feb 20;273(8):4424-35 PMID: 9468494
  24. Interactions of the basic N-terminal and the acidic C-terminal domains of the maize chromosomal HMGB1 protein.
    Biochemistry. 2004 Jun 29;43(25):8029-37 PMID: 15209498
  25. Sox-4, an Sry-like HMG box protein, is a transcriptional activator in lymphocytes.
    EMBO J. 1993 Oct;12(10):3847-54 PMID: 8404853
  26. Structure-specific binding of the two tandem HMG boxes of HMG1 to four-way junction DNA is mediated by the A domain.
    J Mol Biol. 1999 Nov 26;294(2):373-87 PMID: 10610765
  27. The PROSITE database, its status in 2002.
    Nucleic Acids Res. 2002 Jan 1;30(1):235-8 PMID: 11752303
  28. Cloning and characterization of a high mobility group box 1 (HMGB1) homologue protein from Schistosoma mansoni.
    Mol Biochem Parasitol. 2006 Feb;145(2):137-46 PMID: 16246438
  29. Structural features of the HMG chromosomal proteins and their genes.
    Biochim Biophys Acta. 1990 Jul 30;1049(3):231-43 PMID: 2200521
  30. Chromatin higher order structure: opening up chromatin for transcription.
    Brief Funct Genomic Proteomic. 2004 Feb;2(4):334-43 PMID: 15163368
  31. Prediction of the general transcription factors associated with RNA polymerase II in Plasmodium falciparum: conserved features and differences relative to other eukaryotes.
    BMC Genomics. 2005 Jul 23;6:100 PMID: 16042788
  32. HMG1 and 2, and related 'architectural' DNA-binding proteins.
    Trends Biochem Sci. 2001 Mar;26(3):167-74 PMID: 11246022
  33. Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum.
    Genome Res. 2004 Aug;14(8):1548-54 PMID: 15256513
  34. FR900482 class of anti-tumor drugs cross-links oncoprotein HMG I/Y to DNA in vivo.
    Chem Biol. 2000 Oct;7(10):805-12 PMID: 11033083
  35. Histone H1 diversity: bridging regulatory signals to linker histone function.
    Gene. 2001 Jun 13;271(1):1-12 PMID: 11410360
  36. High-mobility group box 1 protein (HMGB1): nuclear weapon in the immune arsenal.
    Nat Rev Immunol. 2005 Apr;5(4):331-42 PMID: 15803152
  37. Origin of H1 linker histones.
    FASEB J. 2001 Jan;15(1):34-42 PMID: 11149891
  38. Priming the nucleosome: a role for HMGB proteins?
    EMBO Rep. 2003 Feb;4(2):131-6 PMID: 12612600
  39. Genome sequence of the human malaria parasite Plasmodium falciparum.
    Nature. 2002 Oct 3;419(6906):498-511 PMID: 12368864
  40. Transcription mapping of a 100 kb locus of Plasmodium falciparum identifies an intergenic region in which transcription terminates and reinitiates.
    EMBO J. 1992 May;11(5):1949-55 PMID: 1374714
  41. Differential expression of two mRNAs from a single gene encoding an HMG1-like DNA binding protein of African trypanosomes.
    Mol Biochem Parasitol. 1992 Mar;51(1):111-8 PMID: 1565127
  42. Structural studies of the high mobility group globular domain and basic tail of HMG-D bound to disulfide cross-linked DNA.
    Biochemistry. 2000 Aug 15;39(32):9725-36 PMID: 10933789
  43. Easier threading through web-based comparisons and cross-validations.
    Bioinformatics. 2001 Aug;17(8):752-3 PMID: 11524382
  44. The production of mature gametocytes of Plasmodium falciparum in continuous cultures of different isolates infective to mosquitoes.
    Trans R Soc Trop Med Hyg. 1982;76(2):242-50 PMID: 7048650
  45. Regulation of DNA-dependent activities by the functional motifs of the high-mobility-group chromosomal proteins.
    Mol Cell Biol. 1999 Aug;19(8):5237-46 PMID: 10409715
  46. The long acidic tail of high mobility group box 1 (HMGB1) protein forms an extended and flexible structure that interacts with specific residues within and between the HMG boxes.
    Biochemistry. 2004 Sep 28;43(38):11992-7 PMID: 15379539
  47. Characterization of PfMyb1 transcription factor during erythrocytic development of 3D7 and F12 Plasmodium falciparum clones.
    Mol Biochem Parasitol. 2004 Nov;138(1):159-63 PMID: 15500927
  48. Differences in DNA recognition and conformational change activity between boxes A and B in HMG2 protein.
    Biochemistry. 1999 Jan 12;38(2):589-95 PMID: 9888798
  49. A role for apical membrane antigen 1 during invasion of hepatocytes by Plasmodium falciparum sporozoites.
    J Biol Chem. 2004 Mar 5;279(10):9490-6 PMID: 14676185
  50. Nucleosome remodeling: one mechanism, many phenomena?
    Biochim Biophys Acta. 2004 Mar 15;1677(1-3):58-63 PMID: 15020046
  51. New EMBO members' review: the double life of HMGB1 chromatin protein: architectural factor and extracellular signal.
    EMBO J. 2001 Aug 15;20(16):4337-40 PMID: 11500360
  52. The DNA bend angle and binding affinity of an HMG box increased by the presence of short terminal arms.
    Nucleic Acids Res. 1996 Mar 15;24(6):1047-51 PMID: 8604337
  53. Plasmodium: control of gene expression in malaria parasites.
    Exp Parasitol. 1993 Aug;77(1):121-8 PMID: 8344402
  54. Solution structure of a DNA-binding domain from HMG1.
    Nucleic Acids Res. 1993 Jul 25;21(15):3427-36 PMID: 8346022
  55. A compendium of the histone H1 family of somatic subtypes: an elusive cast of characters and their characteristics.
    Biochem Cell Biol. 2001;79(3):289-304 PMID: 11467742
  56. Characterization of the gene encoding the largest subunit of Plasmodium falciparum RNA polymerase III.
    Mol Biochem Parasitol. 1991 Jun;46(2):229-39 PMID: 1656254
  57. HMGB1: guiding immunity from within.
    Trends Immunol. 2005 Jul;26(7):381-7 PMID: 15978523
  58. A 24 bp cis-acting element essential for the transcriptional activity of Plasmodium falciparum CDP-diacylglycerol synthase gene promoter.
    Mol Biochem Parasitol. 2002 Apr 30;121(1):87-98 PMID: 11985865
  59. Dealing with death: HMGB1 as a novel target for cancer therapy.
    Curr Opin Investig Drugs. 2003 Dec;4(12):1405-9 PMID: 14763124
  60. DNA-binding properties of the tandem HMG boxes of high-mobility-group protein 1 (HMG1).
    Eur J Biochem. 1998 May 1;253(3):787-95 PMID: 9654080
  61. Multi-protein complexes in eukaryotic gene transcription.
    Plant Mol Biol. 2002 Dec;50(6):925-47 PMID: 12516863
  62. Human malaria parasites in continuous culture.
    Science. 1976 Aug 20;193(4254):673-5 PMID: 781840
  63. HMG-like chromosomal proteins in Trypanosoma cruzi.
    J Cell Biochem. 1992 Nov;50(3):279-84 PMID: 1469064
  64. Transcriptional and post-transcriptional regulation of TcR, CD4 and CD8 gene expression during activation of normal human T lymphocytes.
    EMBO J. 1990 Jun;9(6):1867-72 PMID: 2140772
  65. Plasmodium biology: genomic gleanings.
    Cell. 2003 Dec 26;115(7):771-85 PMID: 14697197
  66. Activation of a Plasmodium falciparum cdc2-related kinase by heterologous p25 and cyclin H. Functional characterization of a P. falciparum cyclin homologue.
    J Biol Chem. 2000 Mar 24;275(12):8952-8 PMID: 10722743
  67. Revised nomenclature for high mobility group (HMG) chromosomal proteins.
    Trends Biochem Sci. 2001 Mar;26(3):152-3 PMID: 11246012
Article Info
Journal
Eukaryotic cell
Abbr.
Eukaryot Cell
ISSN
1535-9778
Published
2006-04-00
Pages
672-82
Language
English
Region
United States
NLM ID
101130731
PMCID
PMC1459676
Subset
IM
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