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PMID: 16986321 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

ScrumPy: metabolic modelling with Python.

Systems biology ·Vol. 153 ·No. 5 ·2006-09-00 ·Pages 375-8

Poolman MG

Abstract

ScrumPy is a software package used for the definition and analysis of metabolic models. It is written using the Python programming language that is also used as a user interface. ScrumPy has features for both kinetic and structural modelling, but the emphasis is on structural modelling and those features of most relevance to analysis of large (genome-scale) models. The aim is at describing ScrumPy's functionality to readers with some knowledge of metabolic modelling, but implementation, programming and other computational details are omitted. ScrumPy is released under the Gnu Public Licence, and available for download from http://mudshark.brookes.ac.uk/ ScrumPy.

MeSH Terms
Adaptation, Physiological/physiology Algorithms Animals Cell Physiological Phenomena Computer Simulation Feedback/physiology Homeostasis/physiology Humans Kinetics Models, Biological Programming Languages Proteome/metabolism Signal Transduction/physiology Software Software Design
Chemicals
Proteome
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Poolman M G
School of Molecular and Biological Sciences, Oxford Brooks University, Oxford OX3 0BP, UK. [email protected]
Article Info
Journal
Systems biology
Abbr.
Syst Biol (Stevenage)
ISSN
1741-2471
Published
2006-09-00
Pages
375-8
Language
English
Region
England
NLM ID
101232067
Subset
IM
Grants
Biotechnology and Biological Sciences Research Council · CFB17702 · United Kingdom
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