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PMID: 17090214 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

The marine viromes of four oceanic regions.

PLoS biology ·Vol. 4 ·No. 11 ·2006-11-00 ·Pages e368

Angly FE, Felts B, Breitbart M, Salamon P, Edwards RA, Carlson C, Chan AM, Haynes M, Kelley S, Liu H, Mahaffy JM, Mueller JE, Nulton J, Olson R, Parsons R, Rayhawk S, Suttle CA, Rohwer F

Abstract

Viruses are the most common biological entities in the marine environment. There has not been a global survey of these viruses, and consequently, it is not known what types of viruses are in Earth's oceans or how they are distributed. Metagenomic analyses of 184 viral assemblages collected over a decade and representing 68 sites in four major oceanic regions showed that most of the viral sequences were not similar to those in the current databases. There was a distinct "marine-ness" quality to the viral assemblages. Global diversity was very high, presumably several hundred thousand of species, and regional richness varied on a North-South latitudinal gradient. The marine regions had different assemblages of viruses. Cyanophages and a newly discovered clade of single-stranded DNA phages dominated the Sargasso Sea sample, whereas prophage-like sequences were most common in the Arctic. However most viral species were found to be widespread. With a majority of shared species between oceanic regions, most of the differences between viral assemblages seemed to be explained by variation in the occurrence of the most common viral species and not by exclusion of different viral genomes. These results support the idea that viruses are widely dispersed and that local environmental conditions enrich for certain viral types through selective pressure.

MeSH Terms
Bacteriophages/isolation & purification Biodiversity DNA, Single-Stranded/isolation & purification Genetic Variation Genome, Viral Marine Biology Molecular Sequence Data Oceans and Seas Phylogeny Seawater/virology Selection Bias Specimen Handling Viruses/classification,genetics,isolation & purification
Chemicals
DNA, Single-Stranded
Authors & Affiliations
18 authors, click to expand affiliations / ORCID
Angly Florent E
Department of Biology, San Diego State University, San Diego, California, USA.
Felts Ben
Breitbart Mya
Salamon Peter
Edwards Robert A
Carlson Craig
Chan Amy M
Haynes Matthew
Kelley Scott
Liu Hong
Mahaffy Joseph M
Mueller Jennifer E
Nulton Jim
Olson Robert
Parsons Rachel
Rayhawk Steve
Suttle Curtis A
Rohwer Forest
Conflict of Interest

Competing interests. The authors have declared that no competing interests exist.

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Article Info
Journal
PLoS biology
Abbr.
PLoS Biol
ISSN
1545-7885
Published
2006-11-00
Pages
e368
Language
English
Region
United States
NLM ID
101183755
PMCID
PMC1634881
Subset
IM
Databases
GDB
17765, 17767, 17769, 17771, GM00060, GM00061, GM00062, GM00063
Corrections
CommentIn
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