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PMID: 17090583 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S.

The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data.

Nucleic acids research ·Vol. 35 ·No. Database issue ·2007-01-00 ·Pages D169-72

Cole JR, Chai B, Farris RJ, Wang Q, Kulam-Syed-Mohideen AS, McGarrell DM, Bandela AM, Cardenas E, Garrity GM, Tiedje JM

Abstract

Substantial new features have been implemented at the Ribosomal Database Project in response to the increased importance of high-throughput rRNA sequence analysis in microbial ecology and related disciplines. The most important changes include quality analysis, including chimera detection, for all available rRNA sequences and the introduction of myRDP Space, a new web component designed to help researchers place their own data in context with the RDP's data. In addition, new video tutorials describe how to use RDP features. Details about RDP data and analytical functions can be found at the RDP-II website (http://rdp.cme.msu.edu/).

MeSH Terms
Databases, Nucleic Acid Internet Quality Control RNA, Ribosomal/chemistry Sequence Analysis, RNA/standards User-Computer Interface
Chemicals
RNA, Ribosomal
Authors & Affiliations
10 authors, click to expand affiliations / ORCID
Cole J R
Center for Microbial Ecology, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA. [email protected]
Chai B
Farris R J
Wang Q
Kulam-Syed-Mohideen A S
McGarrell D M
Bandela A M
Cardenas E
Garrity G M
Tiedje J M
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
DOI
10.1093/nar/gkl889
Email
[email protected]
Published
2007-01-00
Epub
2006-00-07
Pages
D169-72
Language
English
Region
England
NLM ID
0411011
PMCID
PMC1669760
Subset
IM
External Links
PubMed source DOI: 10.1093/nar/gkl889 PMC Full Text View journal details
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