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PMID: 17349953 Published · ppublish English Journal Article Research Support, N.I.H., Extramural

Rad50 adenylate kinase activity regulates DNA tethering by Mre11/Rad50 complexes.

Molecular cell ·Vol. 25 ·No. 5 ·2007-03-09 ·Pages 647-61

Bhaskara V, Dupré A, Lengsfeld B, Hopkins BB, Chan A, Lee JH, Zhang X, Gautier J, Zakian V, Paull TT

Abstract

Mre11 and Rad50 are the catalytic components of a highly conserved DNA repair complex that functions in many aspects of DNA metabolism involving double-strand breaks. The ATPase domains in Rad50 are related to the ABC transporter family of ATPases, previously shown to share structural similarities with adenylate kinases. Here we demonstrate that Mre11/Rad50 complexes from three organisms catalyze the reversible adenylate kinase reaction in vitro. Mutation of the conserved signature motif reduces the adenylate kinase activity of Rad50 but does not reduce ATP hydrolysis. This mutant resembles a rad50 null strain with respect to meiosis and telomere maintenance in S. cerevisiae, correlating adenylate kinase activity with in vivo functions. An adenylate kinase inhibitor blocks Mre11/Rad50-dependent DNA tethering in vitro and in cell-free extracts, indicating that adenylate kinase activity by Mre11/Rad50 promotes DNA-DNA associations. We propose a model for Rad50 that incorporates both ATPase and adenylate kinase reactions as critical activities that regulate Rad50 functions.

MeSH Terms
Acid Anhydride Hydrolases Adenine/metabolism Adenosine Triphosphate/metabolism Adenylate Kinase/antagonists & inhibitors,metabolism Amino Acid Motifs Animals Archaeal Proteins/metabolism Catalysis/drug effects DNA/metabolism DNA Repair Enzymes/metabolism DNA-Binding Proteins/metabolism Dinucleoside Phosphates/metabolism Endodeoxyribonucleases/metabolism Enzyme Inhibitors/pharmacology Exodeoxyribonucleases/metabolism Humans Hydrolysis/drug effects MRE11 Homologue Protein Mutant Proteins/metabolism Mutation/genetics Pyrococcus furiosus/drug effects,enzymology Saccharomyces cerevisiae/drug effects,enzymology Saccharomyces cerevisiae Proteins/metabolism Xenopus
Chemicals
Archaeal Proteins DNA-Binding Proteins Dinucleoside Phosphates Enzyme Inhibitors MRE11 protein, human Mutant Proteins RAD50 protein, S cerevisiae Saccharomyces cerevisiae Proteins P(1),P(5)-di(adenosine-5'-)pentaphosphate Adenosine Triphosphate DNA Adenylate Kinase Endodeoxyribonucleases Exodeoxyribonucleases MRE11 Homologue Protein MRE11 protein, S cerevisiae Mre11 protein, archaeal Rad50 protein, archaeal Acid Anhydride Hydrolases Rad50 protein, human DNA Repair Enzymes Adenine
Authors & Affiliations
10 authors, click to expand affiliations / ORCID
Bhaskara Venugopal
Department of Chemistry and Biochemistry, University of Texas at Austin, Austin, TX 78712, USA.
Dupré Aude
Lengsfeld Bettina
Hopkins Ben B
Chan Angela
Lee Ji-Hoon
Zhang Xiaoming
Gautier Jean
Zakian Virginia
Paull Tanya T
References (46)
46 references, click to expand
  1. ABC-ATPases, adaptable energy generators fuelling transmembrane movement of a variety of molecules in organisms from bacteria to humans.
    J Mol Biol. 1999 Oct 22;293(2):381-99 PMID: 10529352
  2. RAD50 protein of S.cerevisiae exhibits ATP-dependent DNA binding.
    Nucleic Acids Res. 1993 Aug 11;21(16):3851-6 PMID: 8367302
  3. Depression of cell metabolism and proliferation by membrane-permeable and -impermeable modulators: role for AMP-to-ATP ratio.
    Am J Physiol Regul Integr Comp Physiol. 2005 Feb;288(2):R501-10 PMID: 15458972
  4. Effect of amino acid substitutions in the rad50 ATP binding domain on DNA double strand break repair in yeast.
    J Biol Chem. 2005 Jan 28;280(4):2620-7 PMID: 15546877
  5. Suppression of gross chromosomal rearrangements by the multiple functions of the Mre11-Rad50-Xrs2 complex in Saccharomyces cerevisiae.
    DNA Repair (Amst). 2005 May 2;4(5):606-17 PMID: 15811632
  6. ATM activation by DNA double-strand breaks through the Mre11-Rad50-Nbs1 complex.
    Science. 2005 Apr 22;308(5721):551-4 PMID: 15790808
  7. The Mre11/Rad50/Xrs2 complex and non-homologous end-joining of incompatible ends in S. cerevisiae.
    DNA Repair (Amst). 2005 Nov 21;4(11):1281-94 PMID: 16043424
  8. Nucleotide-binding domains of cystic fibrosis transmembrane conductance regulator, an ABC transporter, catalyze adenylate kinase activity but not ATP hydrolysis.
    J Biol Chem. 2006 Feb 17;281(7):4058-68 PMID: 16361259
  9. Two-step activation of ATM by DNA and the Mre11-Rad50-Nbs1 complex.
    Nat Struct Mol Biol. 2006 May;13(5):451-7 PMID: 16622404
  10. Studies on adenine and adenosine metabolism by intact human erythrocytes using high performance liquid chromatography.
    Biochim Biophys Acta. 1976 Jun 23;437(1):1-5 PMID: 949498
  11. Chromosome fragmentation after induction of a double-strand break is an active process prevented by the RMX repair complex.
    Curr Biol. 2004 Dec 14;14(23):2107-12 PMID: 15589152
  12. Isolation and characterization of Xenopus ATM (X-ATM): expression, localization, and complex formation during oogenesis and early development.
    Oncogene. 1999 Nov 25;18(50):7070-9 PMID: 10597308
  13. Structural biology of Rad50 ATPase: ATP-driven conformational control in DNA double-strand break repair and the ABC-ATPase superfamily.
    Cell. 2000 Jun 23;101(7):789-800 PMID: 10892749
  14. The role of the Mre11-Rad50-Xrs2 complex in telomerase- mediated lengthening of Saccharomyces cerevisiae telomeres.
    Curr Biol. 2001 Sep 4;11(17):1328-35 PMID: 11553325
  15. Exonuclease activity is required for sequence addition and Cdc13p loading at a de novo telomere.
    Curr Biol. 2001 Sep 4;11(17):1336-40 PMID: 11553326
  16. Promotion of Dnl4-catalyzed DNA end-joining by the Rad50/Mre11/Xrs2 and Hdf1/Hdf2 complexes.
    Mol Cell. 2001 Nov;8(5):1105-15 PMID: 11741545
  17. Human Rad50/Mre11 is a flexible complex that can tether DNA ends.
    Mol Cell. 2001 Nov;8(5):1129-35 PMID: 11741547
  18. The Rad50 zinc-hook is a structure joining Mre11 complexes in DNA recombination and repair.
    Nature. 2002 Aug 1;418(6897):562-6 PMID: 12152085
  19. DNA end-binding specificity of human Rad50/Mre11 is influenced by ATP.
    Nucleic Acids Res. 2002 Oct 15;30(20):4425-31 PMID: 12384589
  20. Complementation between N-terminal Saccharomyces cerevisiae mre11 alleles in DNA repair and telomere length maintenance.
    DNA Repair (Amst). 2002 Jan 22;1(1):27-40 PMID: 12509295
  21. Rap1p telomere association is not required for mitotic stability of a C(3)TA(2) telomere in yeast.
    EMBO J. 2003 Apr 1;22(7):1688-96 PMID: 12660174
  22. Regulation of Mre11/Rad50 by Nbs1: effects on nucleotide-dependent DNA binding and association with ataxia-telangiectasia-like disorder mutant complexes.
    J Biol Chem. 2003 Nov 14;278(46):45171-81 PMID: 12966088
  23. Yeast xrs2 binds DNA and helps target rad50 and mre11 to DNA ends.
    J Biol Chem. 2003 Dec 5;278(49):48957-64 PMID: 14522986
  24. An intrinsic adenylate kinase activity regulates gating of the ABC transporter CFTR.
    Cell. 2003 Dec 26;115(7):837-50 PMID: 14697202
  25. The rad50 signature motif: essential to ATP binding and biological function.
    J Mol Biol. 2004 Jan 23;335(4):937-51 PMID: 14698290
  26. Mre11 assembles linear DNA fragments into DNA damage signaling complexes.
    PLoS Biol. 2004 May;2(5):E110 PMID: 15138496
  27. The Mre11 complex and the metabolism of chromosome breaks: the importance of communicating and holding things together.
    DNA Repair (Amst). 2004 Aug-Sep;3(8-9):845-54 PMID: 15279769
  28. Choreography of the DNA damage response: spatiotemporal relationships among checkpoint and repair proteins.
    Cell. 2004 Sep 17;118(6):699-713 PMID: 15369670
  29. The Mre11 complex and ATM: a two-way functional interaction in recognising and signaling DNA double strand breaks.
    DNA Repair (Amst). 2004 Nov 2;3(11):1515-20 PMID: 15380107
  30. The ATP switch model for ABC transporters.
    Nat Struct Mol Biol. 2004 Oct;11(10):918-26 PMID: 15452563
  31. Distribution and dynamics of chromatin modification induced by a defined DNA double-strand break.
    Curr Biol. 2004 Oct 5;14(19):1703-11 PMID: 15458641
  32. P 1 ,P 5 -Di(adenosine-5')pentaphosphate, a potent multisubstrate inhibitor of adenylate kinase.
    J Biol Chem. 1973 Feb 10;248(3):1121-3 PMID: 4734335
  33. Identification of the cystic fibrosis gene: genetic analysis.
    Science. 1989 Sep 8;245(4922):1073-80 PMID: 2570460
  34. Analysis of wild-type and rad50 mutants of yeast suggests an intimate relationship between meiotic chromosome synapsis and recombination.
    Cell. 1990 May 4;61(3):419-36 PMID: 2185891
  35. Structural model of ATP-binding proteins associated with cystic fibrosis, multidrug resistance and bacterial transport.
    Nature. 1990 Jul 26;346(6282):362-5 PMID: 1973824
  36. RAP1 protein interacts with yeast telomeres in vivo: overproduction alters telomere structure and decreases chromosome stability.
    Cell. 1990 Nov 16;63(4):739-50 PMID: 2225074
  37. Cell cycle and genetic requirements of two pathways of nonhomologous end-joining repair of double-strand breaks in Saccharomyces cerevisiae.
    Mol Cell Biol. 1996 May;16(5):2164-73 PMID: 8628283
  38. A recombinant polypeptide model of the second nucleotide-binding fold of the cystic fibrosis transmembrane conductance regulator functions as an active ATPase, GTPase and adenylate kinase.
    FEBS Lett. 1997 Jun 30;410(2-3):180-6 PMID: 9237625
  39. Overexpression, purification, and characterization of the SbcCD protein from Escherichia coli.
    J Biol Chem. 1997 Aug 8;272(32):19819-26 PMID: 9242643
  40. Components of the Ku-dependent non-homologous end-joining pathway are involved in telomeric length maintenance and telomeric silencing.
    EMBO J. 1998 Mar 16;17(6):1819-28 PMID: 9501103
  41. The nuclease activity of Mre11 is required for meiosis but not for mating type switching, end joining, or telomere maintenance.
    Mol Cell Biol. 1999 Jan;19(1):556-66 PMID: 9858579
  42. Nucleoside monophosphate kinases: structure, mechanism, and substrate specificity.
    Adv Enzymol Relat Areas Mol Biol. 1999;73:103-34, x PMID: 10218107
  43. Nbs1 potentiates ATP-driven DNA unwinding and endonuclease cleavage by the Mre11/Rad50 complex.
    Genes Dev. 1999 May 15;13(10):1276-88 PMID: 10346816
  44. Recombination proteins in yeast.
    Annu Rev Genet. 2004;38:233-71 PMID: 15568977
  45. DNA breaks promote genomic instability by impeding proper chromosome segregation.
    Curr Biol. 2004 Dec 14;14(23):2096-106 PMID: 15589151
  46. Systems for the study of nuclear assembly, DNA replication, and nuclear breakdown in Xenopus laevis egg extracts.
    Methods Cell Biol. 1991;35:449-68 PMID: 1664032
Article Info
Journal
Molecular cell
Abbr.
Mol Cell
ISSN
1097-2765
Published
2007-03-09
Pages
647-61
Language
English
Region
United States
NLM ID
9802571
PMCID
PMC3050042
Subset
IM
Grants
NCI NIH HHS · R01 CA092245-10 · United States
NCI NIH HHS · R01 CA094008-09 · United States
NCI NIH HHS · R01 CA092245 · United States
NCI NIH HHS · R01 CA092245-06 · United States
NCI NIH HHS · R01 CA 094008 · United States
NCI NIH HHS · R01 CA 92245 · United States
NCI NIH HHS · R01 CA094008 · United States
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