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PMID: 17852182 Published · ppublish English Comparative Study Evaluation Study Journal Article

A comparison of non-standard solvers for ODEs describing cellular reactions in the heart.

Computer methods in biomechanics and biomedical engineering ·Vol. 10 ·No. 5 ·2007-10-00 ·Pages 317-26

Maclachlan MC, Sundnes J, Spiteri RJ

Abstract

Mathematical models for the electrical activity in cardiac cells are normally formulated as systems of ordinary differential equations (ODEs). The equations are nonlinear and describe processes occurring on a wide range of time scales. Under normal accuracy requirements, this makes the systems stiff and therefore challenging to solve numerically. As standard implicit solvers are difficult to implement, explicit solvers such as the forward Euler method are commonly used, despite their poor efficiency. Non-standard formulations of the forward Euler method, derived from the analytical solution of linear ODEs, can give significantly improved performance while maintaining simplicity of implementation. In this paper we study the performance of three non-standard methods on two different cell models with comparable complexity but very different stiffness characteristics.

MeSH Terms
Action Potentials/physiology Algorithms Animals Computer Simulation Heart Conduction System/physiology Humans Ion Channel Gating/physiology Ion Channels/physiology Models, Cardiovascular Myocytes, Cardiac/physiology Programming Languages Reproducibility of Results Sensitivity and Specificity Software Software Validation
Chemicals
Ion Channels
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Maclachlan Mary C
Simula Research Laboratory, Lysaker, Norway. [email protected]
Sundnes Joakim
Spiteri Raymond J
Article Info
Journal
Computer methods in biomechanics and biomedical engineering
Abbr.
Comput Methods Biomech Biomed Engin
ISSN
1025-5842
Published
2007-10-00
Pages
317-26
Language
English
Region
England
NLM ID
9802899
Subset
IM
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