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PMID: 17988382 Published · epublish English Journal Article Research Support, Non-U.S. Gov't

Molecular dynamics simulation of human LOX-1 provides an explanation for the lack of OxLDL binding to the Trp150Ala mutant.

BMC structural biology ·Vol. 7 ·2007-11-07 ·Pages 73

Falconi M, Biocca S, Novelli G, Desideri A

Abstract

Dimeric lectin-like oxidized low-density lipoprotein receptor-1 LOX-1 is the target receptor for oxidized low density lipoprotein in endothelial cells. In vivo assays revealed that in LOX-1 the basic spine arginine residues are important for binding, which is lost upon mutation of Trp150 with alanine. Molecular dynamics simulations of the wild-type LOX-1 and of the Trp150Ala mutant C-type lectin-like domains, have been carried out to gain insight into the severe inactivating effect. The mutation does not alter the dimer stability, but a different dynamical behaviour differentiates the two proteins. As described by the residues fluctuation, the dynamic cross correlation map and the principal component analysis in the wild-type the two monomers display a symmetrical motion that is not observed in the mutant. The symmetrical motion of monomers is completely damped by the structural rearrangement caused by the Trp150Ala mutation. An improper dynamical coupling of the monomers and different fluctuations of the basic spine residues are observed, with a consequent altered binding affinity.

MeSH Terms
Alanine/genetics,metabolism Computer Simulation Crystallography, X-Ray Humans Hydrogen Bonding Lipoproteins, LDL/chemistry,genetics,metabolism Models, Molecular Mutation/genetics Protein Binding Protein Structure, Secondary Protein Structure, Tertiary Protein Subunits/chemistry,metabolism Scavenger Receptors, Class E/chemistry,genetics,metabolism Tryptophan/genetics,metabolism
Chemicals
Lipoproteins, LDL OLR1 protein, human Protein Subunits Scavenger Receptors, Class E oxidized low density lipoprotein Tryptophan Alanine
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Falconi Mattia
Department of Biology and Center of Biostatistics and Bioinformatics, University of Rome Tor Vergata, Via della Ricerca Scientifica, Rome, Italy, 00133. [email protected]
Biocca Silvia
Novelli Giuseppe
Desideri Alessandro
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Article Info
Journal
BMC structural biology
Abbr.
BMC Struct Biol
ISSN
1472-6807
Published
2007-11-07
Epub
2007-00-07
Pages
73
Language
English
Region
England
NLM ID
101088689
PMCID
PMC2194713
Subset
IM
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