Home LiteratureArticle Details

PMID: 18000000 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

NONCODE v2.0: decoding the non-coding.

Nucleic acids research ·Vol. 36 ·No. Database issue ·2008-01-00 ·Pages D170-2

He S, Liu C, Skogerbø G, Zhao H, Wang J, Liu T, Bai B, Zhao Y, Chen R

Abstract

The NONCODE database is an integrated knowledge database designed for the analysis of non-coding RNAs (ncRNAs). Since NONCODE was first released 3 years ago, the number of known ncRNAs has grown rapidly, and there is growing recognition that ncRNAs play important regulatory roles in most organisms. In the updated version of NONCODE (NONCODE v2.0), the number of collected ncRNAs has reached 206 226, including a wide range of microRNAs, Piwi-interacting RNAs and mRNA-like ncRNAs. The improvements brought to the database include not only new and updated ncRNA data sets, but also an incorporation of BLAST alignment search service and access through our custom UCSC Genome Browser. NONCODE can be found under http://www.noncode.org or http://noncode.bioinfo.org.cn.

MeSH Terms

Animals Databases, Nucleic Acid Humans Internet RNA, Untranslated/chemistry,classification,genetics User-Computer Interface

Chemicals

RNA, Untranslated

Authors & Affiliations

9 authors, click to expand affiliations / ORCID

He Shunmin

Bioinformatics Laboratory and National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.

Liu Changning

Skogerbø Geir

Zhao Haitao

Wang Jie

Liu Tao

Bai Baoyan

Zhao Yi

Chen Runsheng

References (14)

14 references, click to expand

Noncoding RNA gene detection using comparative sequence analysis.
BMC Bioinformatics. 2001;2:8 PMID: 11801179
Database resources of the National Center for Biotechnology Information.
Nucleic Acids Res. 2007 Jan;35(Database issue):D5-12 PMID: 17170002
Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression.
Genome Res. 2006 Jan;16(1):20-9 PMID: 16344563
A combined computational and experimental analysis of two families of snoRNA genes from Caenorhabditis elegans, revealing the expression and evolution pattern of snoRNAs in nematodes.
Genomics. 2007 Apr;89(4):490-501 PMID: 17222528
The UCSC genome browser database: update 2007.
Nucleic Acids Res. 2007 Jan;35(Database issue):D668-73 PMID: 17142222
Non-coding RNA.
Hum Mol Genet. 2006 Apr 15;15 Spec No 1:R17-29 PMID: 16651366
A germline-specific class of small RNAs binds mammalian Piwi proteins.
Nature. 2006 Jul 13;442(7099):199-202 PMID: 16751776
A novel class of small RNAs bind to MILI protein in mouse testes.
Nature. 2006 Jul 13;442(7099):203-7 PMID: 16751777
GenBank.
Nucleic Acids Res. 2007 Jan;35(Database issue):D21-5 PMID: 17202161
Characterization of the piRNA complex from rat testes.
Science. 2006 Jul 21;313(5785):363-7 PMID: 16778019
Expression of Arabidopsis MIRNA genes.
Plant Physiol. 2005 Aug;138(4):2145-54 PMID: 16040653
The transcriptional landscape of the mammalian genome.
Science. 2005 Sep 2;309(5740):1559-63 PMID: 16141072
Fast and reliable prediction of noncoding RNAs.
Proc Natl Acad Sci U S A. 2005 Feb 15;102(7):2454-9 PMID: 15665081
Evolution of small nucleolar RNAs in nematodes.
Nucleic Acids Res. 2006 May 19;34(9):2676-85 PMID: 16714446

Article Info

Journal

Nucleic acids research

Abbr.

Nucleic Acids Res

ISSN

1362-4962

DOI

10.1093/nar/gkm1011

Published

2008-01-00

Epub

2007-00-13

Pages

D170-2

Language

English

Region

England

NLM ID

0411011

PMCID

PMC2238973

Subset

External Links

PubMed source DOI: 10.1093/nar/gkm1011 PMC Full Text View journal details

Analysis Services

NONCODE v2.0: decoding the non-coding.

Contact

WeChat Official Account