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PMID: 18039881 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Demographic history has influenced nucleotide diversity in European Pinus sylvestris populations.

Genetics ·Vol. 177 ·No. 3 ·2007-11-00 ·Pages 1713-24

Pyhäjärvi T, García-Gil MR, Knürr T, Mikkonen M, Wachowiak W, Savolainen O

Abstract

To infer the role of natural selection in shaping standing genetic diversity, it is necessary to assess the genomewide impact of demographic history on nucleotide diversity. In this study we analyzed sequence diversity of 16 nuclear loci in eight Pinus sylvestris populations. Populations were divided into four geographical groups on the basis of their current location and the geographical history of the region: northern Europe, central Europe, Spain, and Turkey. There were no among-group differences in the level of silent nucleotide diversity, which was approximately 0.005/bp in all groups. There was some evidence that linkage disequilibrium extended further in northern Europe than in central Europe: the estimates of the population recombination rate parameter, rho, were 0.0064 and 0.0294, respectively. The summary statistics of nucleotide diversity in central and northern European populations were compatible with an ancient bottleneck rather than the standard neutral model.

MeSH Terms
Alleles Cluster Analysis DNA, Plant/genetics Europe Evolution, Molecular Gene Frequency Genetic Variation Linkage Disequilibrium Models, Genetic Molecular Sequence Data Pinus sylvestris/genetics Recombination, Genetic Selection, Genetic Time Factors
Chemicals
DNA, Plant
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Pyhäjärvi Tanja
Department of Biology, University of Oulu, 90014 Oulu, Finland. [email protected]
García-Gil M Rosario
Knürr Timo
Mikkonen Merja
Wachowiak Witold
Savolainen Outi
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Article Info
Journal
Genetics
Abbr.
Genetics
ISSN
0016-6731
DOI
10.1534/genetics.107.077099
Email
[email protected]
Published
2007-11-00
Pages
1713-24
Language
English
Region
United States
NLM ID
0374636
PMCID
PMC2147978
Subset
IM
Databases
GENBANK
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PubMed source DOI: 10.1534/genetics.107.077099 PMC Full Text View journal details
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