Home LiteratureArticle Details
PMID: 18381349 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Genetic interaction between Bardet-Biedl syndrome genes and implications for limb patterning.

Human molecular genetics ·Vol. 17 ·No. 13 ·2008-07-01 ·Pages 1956-67

Tayeh MK, Yen HJ, Beck JS, Searby CC, Westfall TA, Griesbach H, Sheffield VC, Slusarski DC

Abstract

Bardet-Biedl syndrome (BBS) is a pleiotropic, genetically heterogeneous disorder characterized by obesity, retinopathy, polydactyly, cognitive impairment, renal and cardiac anomalies, as well as hypertension and diabetes. Multiple genes are known to independently cause BBS. These genes do not appear to code for the same functional category of proteins; yet, mutation of each results in a similar phenotype. Gene knockdown of different BBS genes in zebrafish shows strikingly overlapping phenotypes including defective melanosome transport and disruption of the ciliated Kupffer's vesicle. Here, we demonstrate that individual knockdown of bbs1 and bbs3 results in the same prototypical phenotypes as reported previously for other BBS genes. We utilize the zebrafish system to comprehensively determine whether simultaneous pair-wise knockdown of BBS genes reveals genetic interactions between BBS genes. Using this approach, we demonstrate eight genetic interactions between a subset of BBS genes. The synergistic relationships between distinct combinations are not due to functional redundancy but indicate specific interactions within a multi-subunit BBS complex. In addition, we utilize the zebrafish model system to investigate limb development. Human polydactyly is a cardinal feature of BBS not reproduced in BBS-mouse models. We evaluated zebrafish fin bud patterning and observed altered Sonic hedgehog (shh) expression and subsequent changes to fin skeletal elements. The SHH fin bud phenotype was also used to confirm specific genetic interactions between BBS genes. This study reveals an in vivo requirement for BBS function in limb bud patterning. Our results provide important new insights into the mechanism and biological significance of BBS.

MeSH Terms
Animals Bardet-Biedl Syndrome/genetics,physiopathology Body Patterning Cartilage/pathology Disease Models, Animal Embryo, Nonmammalian/metabolism,physiology Extremities/embryology,physiopathology Gene Expression Regulation Gene Silencing Hedgehog Proteins/metabolism Humans Phenotype Polydactyly/genetics,physiopathology Species Specificity Zebrafish Zebrafish Proteins/genetics,metabolism
Chemicals
Bbs1 protein, zebrafish Hedgehog Proteins Zebrafish Proteins
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Tayeh Marwan K
Department of Pediatrics, Howard Hughes Medical Institute, University of Iowa, Iowa City, IA 52242, USA.
Yen Hsan-Jan
Beck John S
Searby Charles C
Westfall Trudi A
Griesbach Hilary
Sheffield Val C
Slusarski Diane C
References (62)
62 references, click to expand
  1. Identification of the gene that, when mutated, causes the human obesity syndrome BBS4.
    Nat Genet. 2001 Jun;28(2):188-91 PMID: 11381270
  2. A core complex of BBS proteins cooperates with the GTPase Rab8 to promote ciliary membrane biogenesis.
    Cell. 2007 Jun 15;129(6):1201-13 PMID: 17574030
  3. Differential induction of four msx homeobox genes during fin development and regeneration in zebrafish.
    Development. 1995 Feb;121(2):347-57 PMID: 7768177
  4. The melanosome: membrane dynamics in black and white.
    Nat Rev Mol Cell Biol. 2001 Oct;2(10):738-48 PMID: 11584301
  5. BBS10 encodes a vertebrate-specific chaperonin-like protein and is a major BBS locus.
    Nat Genet. 2006 May;38(5):521-4 PMID: 16582908
  6. Transient establishment of anteroposterior polarity in the zebrafish pectoral fin bud in the absence of sonic hedgehog activity.
    Development. 1999 Nov;126(21):4817-26 PMID: 10518498
  7. Kupffer's vesicle is a ciliated organ of asymmetry in the zebrafish embryo that initiates left-right development of the brain, heart and gut.
    Development. 2005 Mar;132(6):1247-60 PMID: 15716348
  8. Specification of cell fates at the dorsal margin of the zebrafish gastrula.
    Development. 1996 Jul;122(7):2225-37 PMID: 8681803
  9. Recruitment of the tinman homolog Nkx-2.5 by serum response factor activates cardiac alpha-actin gene transcription.
    Mol Cell Biol. 1996 Nov;16(11):6372-84 PMID: 8887666
  10. The melanosome as a model to study organelle motility in mammals.
    Pigment Cell Res. 2004 Apr;17(2):111-8 PMID: 15016299
  11. Coordinate embryonic expression of three zebrafish engrailed genes.
    Development. 1992 Dec;116(4):1001-10 PMID: 1363539
  12. The development of the paired fins in the zebrafish (Danio rerio).
    Mech Dev. 1998 Dec;79(1-2):99-120 PMID: 10349624
  13. Comparative genomics and gene expression analysis identifies BBS9, a new Bardet-Biedl syndrome gene.
    Am J Hum Genet. 2005 Dec;77(6):1021-33 PMID: 16380913
  14. Bardet-Biedl syndrome type 4 (BBS4)-null mice implicate Bbs4 in flagella formation but not global cilia assembly.
    Proc Natl Acad Sci U S A. 2004 Jun 8;101(23):8664-9 PMID: 15173597
  15. Identification of a novel Bardet-Biedl syndrome protein, BBS7, that shares structural features with BBS1 and BBS2.
    Am J Hum Genet. 2003 Mar;72(3):650-8 PMID: 12567324
  16. Mutations in MKKS cause obesity, retinal dystrophy and renal malformations associated with Bardet-Biedl syndrome.
    Nat Genet. 2000 Sep;26(1):67-70 PMID: 10973251
  17. Oral-facial-digital type I protein is required for primary cilia formation and left-right axis specification.
    Nat Genet. 2006 Jan;38(1):112-7 PMID: 16311594
  18. ADP ribosylation factor-like protein 2 (Arl2) regulates the interaction of tubulin-folding cofactor D with native tubulin.
    J Cell Biol. 2000 May 29;149(5):1087-96 PMID: 10831612
  19. Expression of achaete-scute homolog 3 in Xenopus embryos converts ectodermal cells to a neural fate.
    Genes Dev. 1994 Jun 15;8(12):1434-47 PMID: 7926743
  20. Cardiac abnormalities in the Bardet-Biedl syndrome: echocardiographic studies of 22 patients.
    Am J Med Genet. 1994 Aug 15;52(2):164-9 PMID: 7802002
  21. Cilia: tuning in to the cell's antenna.
    Curr Biol. 2006 Aug 8;16(15):R604-14 PMID: 16890522
  22. Establishing a connection between cilia and Bardet-Biedl Syndrome.
    Trends Mol Med. 2004 Mar;10(3):106-9 PMID: 15106604
  23. Mutations in MKKS cause Bardet-Biedl syndrome.
    Nat Genet. 2000 Sep;26(1):15-6 PMID: 10973238
  24. Cilia and Hedgehog responsiveness in the mouse.
    Proc Natl Acad Sci U S A. 2005 Aug 9;102(32):11325-30 PMID: 16061793
  25. Pitfalls of homozygosity mapping: an extended consanguineous Bardet-Biedl syndrome family with two mutant genes (BBS2, BBS10), three mutations, but no triallelism.
    Eur J Hum Genet. 2006 Nov;14(11):1195-203 PMID: 16823392
  26. Homozygosity mapping with SNP arrays identifies TRIM32, an E3 ubiquitin ligase, as a Bardet-Biedl syndrome gene (BBS11).
    Proc Natl Acad Sci U S A. 2006 Apr 18;103(16):6287-92 PMID: 16606853
  27. A functionally conserved homolog of the Drosophila segment polarity gene hh is expressed in tissues with polarizing activity in zebrafish embryos.
    Cell. 1993 Dec 31;75(7):1431-44 PMID: 8269519
  28. OFD1 is a centrosomal/basal body protein expressed during mesenchymal-epithelial transition in human nephrogenesis.
    J Am Soc Nephrol. 2004 Oct;15(10):2556-68 PMID: 15466260
  29. Bbs2-null mice have neurosensory deficits, a defect in social dominance, and retinopathy associated with mislocalization of rhodopsin.
    Proc Natl Acad Sci U S A. 2004 Nov 23;101(47):16588-93 PMID: 15539463
  30. The cytoskeleton in fish melanophore melanosome positioning.
    Microsc Res Tech. 2002 Sep 15;58(6):464-9 PMID: 12242703
  31. Dissection of epistasis in oligogenic Bardet-Biedl syndrome.
    Nature. 2006 Jan 19;439(7074):326-30 PMID: 16327777
  32. The spectrum of renal disease in Laurence-Moon-Biedl syndrome.
    N Engl J Med. 1988 Sep 8;319(10):615-8 PMID: 3412378
  33. Mkks-null mice have a phenotype resembling Bardet-Biedl syndrome.
    Hum Mol Genet. 2005 May 1;14(9):1109-18 PMID: 15772095
  34. BBS4 is a minor contributor to Bardet-Biedl syndrome and may also participate in triallelic inheritance.
    Am J Hum Genet. 2002 Jul;71(1):22-9 PMID: 12016587
  35. Basal body dysfunction is a likely cause of pleiotropic Bardet-Biedl syndrome.
    Nature. 2003 Oct 9;425(6958):628-33 PMID: 14520415
  36. Secretory lysosomes.
    Nat Rev Mol Cell Biol. 2002 Feb;3(2):122-31 PMID: 11836514
  37. Pigment cells: a model for the study of organelle transport.
    Annu Rev Cell Dev Biol. 2003;19:469-91 PMID: 14570578
  38. Heterozygous mutations in BBS1, BBS2 and BBS6 have a potential epistatic effect on Bardet-Biedl patients with two mutations at a second BBS locus.
    Hum Mol Genet. 2003 Jul 15;12(14):1651-9 PMID: 12837689
  39. Triallelic inheritance in Bardet-Biedl syndrome, a Mendelian recessive disorder.
    Science. 2001 Sep 21;293(5538):2256-9 PMID: 11567139
  40. Arf, Arl, Arp and Sar proteins: a family of GTP-binding proteins with a structural device for 'front-back' communication.
    EMBO Rep. 2002 Nov;3(11):1035-41 PMID: 12429613
  41. Mutation of an axonemal dynein affects left-right asymmetry in inversus viscerum mice.
    Nature. 1997 Oct 30;389(6654):963-6 PMID: 9353118
  42. The cardinal manifestations of Bardet-Biedl syndrome, a form of Laurence-Moon-Biedl syndrome.
    N Engl J Med. 1989 Oct 12;321(15):1002-9 PMID: 2779627
  43. Targeted deletion of the ATP binding domain of left-right dynein confirms its role in specifying development of left-right asymmetries.
    Development. 1999 Dec;126(23):5495-504 PMID: 10556073
  44. Genetic interaction of BBS1 mutations with alleles at other BBS loci can result in non-Mendelian Bardet-Biedl syndrome.
    Am J Hum Genet. 2003 May;72(5):1187-99 PMID: 12677556
  45. Bardet-Biedl syndrome genes are important in retrograde intracellular trafficking and Kupffer's vesicle cilia function.
    Hum Mol Genet. 2006 Mar 1;15(5):667-77 PMID: 16399798
  46. Positional signalling and specification of digits in chick limb morphogenesis.
    Nature. 1975 Mar 20;254(5497):199-202 PMID: 1113884
  47. The oligogenic properties of Bardet-Biedl syndrome.
    Hum Mol Genet. 2004 Apr 1;13 Spec No 1:R65-71 PMID: 14976158
  48. Dual action of sonic hedgehog on chondrocyte hypertrophy: retrovirus mediated ectopic sonic hedgehog expression in limb bud micromass culture induces novel cartilage nodules that are positive for alkaline phosphatase and type X collagen.
    J Cell Sci. 1997 Nov;110 ( Pt 21):2691-701 PMID: 9427387
  49. A knockin mouse model of the Bardet-Biedl syndrome 1 M390R mutation has cilia defects, ventriculomegaly, retinopathy, and obesity.
    Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19422-7 PMID: 18032602
  50. Hedgehog signalling in the mouse requires intraflagellar transport proteins.
    Nature. 2003 Nov 6;426(6962):83-7 PMID: 14603322
  51. Anterior duplication of the Sonic hedgehog expression pattern in the pectoral fin buds of zebrafish treated with retinoic acid.
    Dev Biol. 1995 Jul;170(1):243-7 PMID: 7601313
  52. Spatially distinct domains of cell behavior in the zebrafish organizer region.
    Biochem Cell Biol. 1997;75(5):563-77 PMID: 9551180
  53. dackel acts in the ectoderm of the zebrafish pectoral fin bud to maintain AER signaling.
    Development. 2000 Oct;127(19):4169-78 PMID: 10976049
  54. Genetic analysis of fin formation in the zebrafish, Danio rerio.
    Development. 1996 Dec;123:255-62 PMID: 9007245
  55. A cluster of noninvoluting endocytic cells at the margin of the zebrafish blastoderm marks the site of embryonic shield formation.
    Dev Biol. 1996 Nov 25;180(1):184-98 PMID: 8948584
  56. Comparative genomic analysis identifies an ADP-ribosylation factor-like gene as the cause of Bardet-Biedl syndrome (BBS3).
    Am J Hum Genet. 2004 Sep;75(3):475-84 PMID: 15258860
  57. Conserved function for embryonic nodal cilia.
    Nature. 2002 Jul 4;418(6893):37-8 PMID: 12097899
  58. Hox gene expression in teleost fins and the origin of vertebrate digits.
    Nature. 1995 Jun 22;375(6533):678-81 PMID: 7791900
  59. Positional cloning of a novel gene on chromosome 16q causing Bardet-Biedl syndrome (BBS2).
    Hum Mol Genet. 2001 Apr 1;10(8):865-74 PMID: 11285252
  60. Nephrocystin-5, a ciliary IQ domain protein, is mutated in Senior-Loken syndrome and interacts with RPGR and calmodulin.
    Nat Genet. 2005 Mar;37(3):282-8 PMID: 15723066
  61. Identification of a novel BBS gene (BBS12) highlights the major role of a vertebrate-specific branch of chaperonin-related proteins in Bardet-Biedl syndrome.
    Am J Hum Genet. 2007 Jan;80(1):1-11 PMID: 17160889
  62. Comparative genomics identifies a flagellar and basal body proteome that includes the BBS5 human disease gene.
    Cell. 2004 May 14;117(4):541-52 PMID: 15137946
Article Info
Journal
Human molecular genetics
Abbr.
Hum Mol Genet
ISSN
1460-2083
Published
2008-07-01
Epub
2008-00-01
Pages
1956-67
Language
English
Region
England
NLM ID
9208958
PMCID
PMC2900902
Subset
IM
Grants
NCI NIH HHS · CA112369 · United States
NEI NIH HHS · EY011298 · United States
NEI NIH HHS · EY017168 · United States
Howard Hughes Medical Institute · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]