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PMID: 18579569 Published · ppublish English Comparative Study Journal Article Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S.

Comparing simulation results of SBML capable simulators.

Bioinformatics (Oxford, England) ·Vol. 24 ·No. 17 ·2008-09-01 ·Pages 1963-5

Bergmann FT, Sauro HM

Abstract

Simulations are an essential tool when analyzing biochemical networks. Researchers and developers seeking to refine simulation tools or develop new ones would benefit greatly from being able to compare their simulation results. We present an approach to compare simulation results between several SBML capable simulators and provide a website for the community to share simulation results. The website with simulation results and additional material can be found under: http://sys-bio.org/sbwWiki/compare. The software used to generate the simulation results is available on the website for download.

MeSH Terms
Computer Simulation Models, Biological Proteome/metabolism Signal Transduction/physiology Software Software Validation
Chemicals
Proteome
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Bergmann Frank T
University of Washington, Department of Bioengineering, William H. Foege Building, Box 355061, Seattle, WA 98195-5061, USA. [email protected]
Sauro Herbert M
References (6)
6 references, click to expand
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Article Info
Journal
Bioinformatics (Oxford, England)
Abbr.
Bioinformatics
ISSN
1367-4811
DOI
10.1093/bioinformatics/btn319
Email
[email protected]
Published
2008-09-01
Epub
2008-00-25
Pages
1963-5
Language
English
Region
England
NLM ID
9808944
PMCID
PMC2732216
Subset
IM
Grants
NIGMS NIH HHS · R01 GM081070 · United States
NIGMS NIH HHS · R01 GM081070-01 · United States
NIGMS NIH HHS · 1R01GM081070-01 · United States
External Links
PubMed source DOI: 10.1093/bioinformatics/btn319 PMC Full Text View journal details
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