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PMID: 18621663 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Identifying autism loci and genes by tracing recent shared ancestry.

Science (New York, N.Y.) ·Vol. 321 ·No. 5886 ·2008-07-11 ·Pages 218-23

Morrow EM, Yoo SY, Flavell SW, Kim TK, Lin Y, Hill RS, Mukaddes NM, Balkhy S, Gascon G, Hashmi A, Al-Saad S, Ware J, Joseph RM, Greenblatt R, Gleason D, Ertelt JA, Apse KA, Bodell A, Partlow JN, Barry B, Yao H, Markianos K, Ferland RJ, Greenberg ME, Walsh CA

Abstract

To find inherited causes of autism-spectrum disorders, we studied families in which parents share ancestors, enhancing the role of inherited factors. We mapped several loci, some containing large, inherited, homozygous deletions that are likely mutations. The largest deletions implicated genes, including PCDH10 (protocadherin 10) and DIA1 (deleted in autism1, or c3orf58), whose level of expression changes in response to neuronal activity, a marker of genes involved in synaptic changes that underlie learning. A subset of genes, including NHE9 (Na+/H+ exchanger 9), showed additional potential mutations in patients with unrelated parents. Our findings highlight the utility of "homozygosity mapping" in heterogeneous disorders like autism but also suggest that defective regulation of gene expression after neural activity may be a mechanism common to seemingly diverse autism mutations.

MeSH Terms
Adaptor Proteins, Signal Transducing/genetics Animals Autistic Disorder/genetics,physiopathology Brain/metabolism Cadherins/genetics Chromosome Mapping Consanguinity Female Formins Gene Deletion Gene Dosage Gene Expression Regulation Genes, Recessive Genetic Predisposition to Disease Homozygote Humans Lod Score Male Mutation Neurons/physiology Oligonucleotide Array Sequence Analysis Pedigree Polymorphism, Single Nucleotide Protocadherins Rats Sodium-Hydrogen Exchangers/genetics Transcription Factors/genetics,metabolism
Chemicals
Adaptor Proteins, Signal Transducing Cadherins DIAPH1 protein, human Formins PCDH10 protein, human Protocadherins SLC9A9 protein, human Sodium-Hydrogen Exchangers Transcription Factors
Authors & Affiliations
25 authors, click to expand affiliations / ORCID
Morrow Eric M
Division of Genetics, Children's Hospital Boston and Harvard Medical School, Boston, MA 02115, USA.
Yoo Seung-Yun
Flavell Steven W
Kim Tae-Kyung
Lin Yingxi
Hill Robert Sean
Mukaddes Nahit M
Balkhy Soher
Gascon Generoso
Hashmi Asif
Al-Saad Samira
Ware Janice
Joseph Robert M
Greenblatt Rachel
Gleason Danielle
Ertelt Julia A
Apse Kira A
Bodell Adria
Partlow Jennifer N
Barry Brenda
Yao Hui
Markianos Kyriacos
Ferland Russell J
Greenberg Michael E
Walsh Christopher A
References (42)
42 references, click to expand
  1. Consanguinity and genetic disorders. Profile from Jordan.
    Saudi Med J. 2007 Jul;28(7):1015-7 PMID: 17603701
  2. Evidence for autosomal recessive inheritance in 46 families with multiple incidences of autism.
    Am J Psychiatry. 1985 Feb;142(2):187-92 PMID: 4038589
  3. Patterning and plasticity of the cerebral cortex.
    Science. 2005 Nov 4;310(5749):805-10 PMID: 16272112
  4. The RING finger protein, RNF8, interacts with retinoid X receptor alpha and enhances its transcription-stimulating activity.
    J Biol Chem. 2004 Apr 30;279(18):18926-34 PMID: 14981089
  5. A genomic screen of autism: evidence for a multilocus etiology.
    Am J Hum Genet. 1999 Aug;65(2):493-507 PMID: 10417292
  6. A genomewide screen for autism: strong evidence for linkage to chromosomes 2q, 7q, and 16p.
    Am J Hum Genet. 2001 Sep;69(3):570-81 PMID: 11481586
  7. Localizing recent adaptive evolution in the human genome.
    PLoS Genet. 2007 Jun;3(6):e90 PMID: 17542651
  8. Disruption of a novel member of a sodium/hydrogen exchanger family and DOCK3 is associated with an attention deficit hyperactivity disorder-like phenotype.
    J Med Genet. 2003 Oct;40(10):733-40 PMID: 14569117
  9. Plasticity-induced growth of dendritic spines by exocytic trafficking from recycling endosomes.
    Neuron. 2006 Dec 7;52(5):817-30 PMID: 17145503
  10. ASPM is a major determinant of cerebral cortical size.
    Nat Genet. 2002 Oct;32(2):316-20 PMID: 12355089
  11. Association between microdeletion and microduplication at 16p11.2 and autism.
    N Engl J Med. 2008 Feb 14;358(7):667-75 PMID: 18184952
  12. Contribution of consanguinuity to polygenic and multifactorial diseases.
    Nat Genet. 2006 Nov;38(11):1224-5 PMID: 17072294
  13. Targeted genomic microarray analysis for identification of chromosome abnormalities in 1500 consecutive clinical cases.
    J Pediatr. 2006 Jul;149(1):98-102 PMID: 16860135
  14. Strong association of de novo copy number mutations with autism.
    Science. 2007 Apr 20;316(5823):445-9 PMID: 17363630
  15. Mutations in the AHI1 gene, encoding jouberin, cause Joubert syndrome with cortical polymicrogyria.
    Am J Hum Genet. 2004 Dec;75(6):979-87 PMID: 15467982
  16. Identification of new Golgi complex specific proteins by direct organelle proteomic analysis.
    Proteomics. 2006 Jun;6(12):3502-8 PMID: 16691549
  17. Molecular cytogenetic analysis and resequencing of contactin associated protein-like 2 in autism spectrum disorders.
    Am J Hum Genet. 2008 Jan;82(1):165-73 PMID: 18179895
  18. Rare independent mutations in renal salt handling genes contribute to blood pressure variation.
    Nat Genet. 2008 May;40(5):592-599 PMID: 18391953
  19. SLC9A6 mutations cause X-linked mental retardation, microcephaly, epilepsy, and ataxia, a phenotype mimicking Angelman syndrome.
    Am J Hum Genet. 2008 Apr;82(4):1003-10 PMID: 18342287
  20. Activity-dependent regulation of MEF2 transcription factors suppresses excitatory synapse number.
    Science. 2006 Feb 17;311(5763):1008-12 PMID: 16484497
  21. A common genetic variant in the neurexin superfamily member CNTNAP2 increases familial risk of autism.
    Am J Hum Genet. 2008 Jan;82(1):160-4 PMID: 18179894
  22. Sodium/hydrogen exchanger gene defect in slow-wave epilepsy mutant mice.
    Cell. 1997 Oct 3;91(1):139-48 PMID: 9335342
  23. BIG-1: a new TAG-1/F3-related member of the immunoglobulin superfamily with neurite outgrowth-promoting activity.
    Neuron. 1994 Aug;13(2):415-26 PMID: 8060619
  24. A mixed epigenetic/genetic model for oligogenic inheritance of autism with a limited role for UBE3A.
    Am J Med Genet A. 2004 Nov 15;131(1):1-10 PMID: 15389703
  25. Epilepsy in autism spectrum disorders.
    Eur Child Adolesc Psychiatry. 2007 Feb;16(1):61-6 PMID: 16932856
  26. Array-based comparative genomic hybridisation identifies high frequency of cryptic chromosomal rearrangements in patients with syndromic autism spectrum disorders.
    J Med Genet. 2006 Nov;43(11):843-9 PMID: 16840569
  27. OL-Protocadherin is essential for growth of striatal axons and thalamocortical projections.
    Nat Neurosci. 2007 Sep;10(9):1151-9 PMID: 17721516
  28. Identification of novel autism candidate regions through analysis of reported cytogenetic abnormalities associated with autism.
    Mol Psychiatry. 2006 Jan;11(1):1, 18-28 PMID: 16205736
  29. Homozygosity mapping: a way to map human recessive traits with the DNA of inbred children.
    Science. 1987 Jun 19;236(4808):1567-70 PMID: 2884728
  30. Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application.
    Genome Biol. 2001;2(8):RESEARCH0032 PMID: 11532216
  31. Mutations of the X-linked genes encoding neuroligins NLGN3 and NLGN4 are associated with autism.
    Nat Genet. 2003 May;34(1):27-9 PMID: 12669065
  32. The 22q11.2 deletion in children: high rate of autistic disorders and early onset of psychotic symptoms.
    J Am Acad Child Adolesc Psychiatry. 2006 Sep;45(9):1104-1113 PMID: 16926618
  33. Epidemiological surveys of autism and other pervasive developmental disorders: an update.
    J Autism Dev Disord. 2003 Aug;33(4):365-82 PMID: 12959416
  34. Linkage, association, and gene-expression analyses identify CNTNAP2 as an autism-susceptibility gene.
    Am J Hum Genet. 2008 Jan;82(1):150-9 PMID: 18179893
  35. G protein-coupled receptor-dependent development of human frontal cortex.
    Science. 2004 Mar 26;303(5666):2033-6 PMID: 15044805
  36. Cytogenetic and molecular characterization of A2BP1/FOX1 as a candidate gene for autism.
    Am J Med Genet B Neuropsychiatr Genet. 2007 Oct 5;144B(7):869-76 PMID: 17503474
  37. Regulation of transcription factors by neuronal activity.
    Nat Rev Neurosci. 2002 Dec;3(12):921-31 PMID: 12461549
  38. Genetic referrals of Middle Eastern origin in a western city: inbreeding and disease profile.
    J Med Genet. 1996 Mar;33(3):212-5 PMID: 8728693
  39. Mapping autism risk loci using genetic linkage and chromosomal rearrangements.
    Nat Genet. 2007 Mar;39(3):319-28 PMID: 17322880
  40. Recurrent 16p11.2 microdeletions in autism.
    Hum Mol Genet. 2008 Feb 15;17(4):628-38 PMID: 18156158
  41. Mutations in the gene encoding the synaptic scaffolding protein SHANK3 are associated with autism spectrum disorders.
    Nat Genet. 2007 Jan;39(1):25-7 PMID: 17173049
  42. Finding genetic contributions to sporadic disease: a recessive locus at 12q24 commonly contributes to patent ductus arteriosus.
    Proc Natl Acad Sci U S A. 2002 Nov 12;99(23):15054-9 PMID: 12409608
Article Info
Journal
Science (New York, N.Y.)
Abbr.
Science
ISSN
1095-9203
Published
2008-07-11
Pages
218-23
Language
English
Region
United States
NLM ID
0404511
PMCID
PMC2586171
Subset
IM
Grants
NIMH NIH HHS · MH64547 · United States
NIMH NIH HHS · R01 MH083565 · United States
NIMH NIH HHS · K01 MH071801-04 · United States
NINDS NIH HHS · R01 NS048276-04 · United States
NINDS NIH HHS · R01 NS048276-01 · United States
NICHD NIH HHS · 5P30HD018655-26 · United States
Howard Hughes Medical Institute · United States
NINDS NIH HHS · R01 NS048276-03 · United States
NIMH NIH HHS · 1K01MH71801 · United States
NIMH NIH HHS · 1R01 MH083565 · United States
NIMH NIH HHS · K23 MH080954-01 · United States
NIMH NIH HHS · 1K23MH080954-01 · United States
NINDS NIH HHS · R01 NS048276 · United States
NIMH NIH HHS · K01 MH071801 · United States
NIMH NIH HHS · K23 MH080954 · United States
NINDS NIH HHS · R01 NS048276-02 · United States
NIMH NIH HHS · K01 MH071801-05 · United States
NINDS NIH HHS · 5R01NS048276-05 · United States
NHGRI NIH HHS · N01-HG-65403 · United States
NINDS NIH HHS · R01 NS048276-05 · United States
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