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PMID: 18725639 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice.

Wu C, You C, Li C, Long T, Chen G, Byrne ME, Zhang Q

Abstract

Transition from the vegetative phase to reproductive phase is a crucial process in the life cycle of higher plants. Although the molecular mechanisms of flowering regulation have been extensively characterized in a number of plant species, little is known regarding how the transition process initiates. Here, we show that the Rice Indeterminate 1 (RID1) gene acts as the master switch for the transition from the vegetative to reproductive phase. RID1 encodes a Cys-2/His-2-type zinc finger transcription factor that does not have an ortholog in Arabidopsis spp. A RID1 knockout (rid1), mutated by T-DNA insertion, never headed after growing for >500 days under a range of growth conditions and is thus referred to as a never-flowering phenotype. This mutation-suppressed expression of the genes is known to be involved in flowering regulation, especially in the Ehd1/Hd3a pathway and a series of RFT homologs. RID1 seems to be independent of the circadian clock. A model was proposed to place RID1 in the molecular pathways of flowering regulation in rice, for which there are two indispensable elements. In the first, RID1 is controlling the phase transition and initiation of floral induction. In the other, the Hd3a/RFL1/FTL complex acts as the immediate inducer of flowering. Loss of function in either element would cause never-flowering. Once the phase transition is induced with the activation of RID1, flowering signal is transduced and regulated through the various pathways and eventually integrated with FT-like proteins to induce flowering.

MeSH Terms
Amino Acid Sequence Biological Clocks Circadian Rhythm Flowers/embryology,genetics Gene Expression Regulation, Plant Genes, Plant Genes, Reporter Genes, Switch Genetic Complementation Test Glucuronidase/metabolism Green Fluorescent Proteins/metabolism Models, Genetic Molecular Sequence Data Mutation/genetics Oryza/embryology,genetics Phenotype Plant Proteins/chemistry,genetics,metabolism Subcellular Fractions/metabolism Transcription Factors/genetics,metabolism Zinc Fingers
Chemicals
Plant Proteins Transcription Factors Green Fluorescent Proteins Glucuronidase
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Wu Changyin
National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Huazhong Agricultural University, Wuhan 430070, China. [email protected]
You Changjun
Li Caishun
Long Tuan
Chen Guoxing
Byrne Mary E
Zhang Qifa
References (38)
38 references, click to expand
  1. Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1.
    Genes Dev. 2004 Apr 15;18(8):926-36 PMID: 15078816
  2. Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS.
    Plant Cell. 2000 Dec;12(12):2473-2484 PMID: 11148291
  3. OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol. 2007 Dec;145(4):1484-94 PMID: 17951465
  4. Mechanisms and function of flower and inflorescence reversion.
    J Exp Bot. 2005 Oct;56(420):2587-99 PMID: 16131510
  5. CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis.
    Nature. 2001 Apr 26;410(6832):1116-20 PMID: 11323677
  6. Flowering: a time for integration.
    Int J Dev Biol. 2005;49(5-6):585-93 PMID: 16096967
  7. Development of enhancer trap lines for functional analysis of the rice genome.
    Plant J. 2003 Aug;35(3):418-27 PMID: 12887592
  8. Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics. 2004 Jul 05;5(1):39 PMID: 15236668
  9. delayed flowering1 Encodes a basic leucine zipper protein that mediates floral inductive signals at the shoot apex in maize.
    Plant Physiol. 2006 Dec;142(4):1523-36 PMID: 17071646
  10. Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice.
    Nat Genet. 2008 Jun;40(6):761-7 PMID: 18454147
  11. FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering.
    Plant Cell. 1999 May;11(5):949-56 PMID: 10330478
  12. Hd3a protein is a mobile flowering signal in rice.
    Science. 2007 May 18;316(5827):1033-6 PMID: 17446351
  13. Genome-wide identification of C2H2 zinc-finger gene family in rice and their phylogeny and expression analysis.
    Plant Mol Biol. 2007 Nov;65(4):467-85 PMID: 17610133
  14. Comparative biology comes into bloom: genomic and genetic comparison of flowering pathways in rice and Arabidopsis.
    Curr Opin Plant Biol. 2003 Apr;6(2):113-20 PMID: 12667866
  15. Phylogenomic analysis of the PEBP gene family in cereals.
    J Mol Evol. 2005 Nov;61(5):579-90 PMID: 16170456
  16. The maize ID1 flowering time regulator is a zinc finger protein with novel DNA binding properties.
    Nucleic Acids Res. 2004 Mar 12;32(5):1710-20 PMID: 15020707
  17. Adaptation of photoperiodic control pathways produces short-day flowering in rice.
    Nature. 2003 Apr 17;422(6933):719-22 PMID: 12700762
  18. Non-random distribution of T-DNA insertions at various levels of the genome hierarchy as revealed by analyzing 13 804 T-DNA flanking sequences from an enhancer-trap mutant library.
    Plant J. 2007 Mar;49(5):947-59 PMID: 17253985
  19. RMD: a rice mutant database for functional analysis of the rice genome.
    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D745-8 PMID: 16381972
  20. Overexpression of RCN1 and RCN2, rice TERMINAL FLOWER 1/CENTRORADIALIS homologs, confers delay of phase transition and altered panicle morphology in rice.
    Plant J. 2002 Mar;29(6):743-50 PMID: 12148532
  21. Adaptation of flowering-time by natural and artificial selection in Arabidopsis and rice.
    J Exp Bot. 2007;58(12):3091-7 PMID: 17693414
  22. Light regulation of circadian clock-controlled gene expression in rice.
    Plant J. 2001 Jun;26(6):607-15 PMID: 11489174
  23. Control of flowering time: interacting pathways as a basis for diversity.
    Plant Cell. 2002;14 Suppl:S111-30 PMID: 12045273
  24. The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants.
    BMC Genomics. 2006 Jun 19;7:158 PMID: 16784536
  25. Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice.
    Genes Dev. 2002 Aug 1;16(15):2006-20 PMID: 12154129
  26. Maize floral regulator protein INDETERMINATE1 is localized to developing leaves and is not altered by light or the sink/source transition.
    J Exp Bot. 2007;58(3):403-14 PMID: 17307745
  27. Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2.
    Proc Natl Acad Sci U S A. 2001 Jul 3;98(14):7922-7 PMID: 11416158
  28. The timing of developmental transitions in plants.
    Cell. 2006 May 19;125(4):655-64 PMID: 16713560
  29. FT protein movement contributes to long-distance signaling in floral induction of Arabidopsis.
    Science. 2007 May 18;316(5827):1030-3 PMID: 17446353
  30. The indeterminate gene encodes a zinc finger protein and regulates a leaf-generated signal required for the transition to flowering in maize.
    Cell. 1998 May 15;93(4):593-603 PMID: 9604934
  31. The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to zinc finger transcription factors.
    Cell. 1995 Mar 24;80(6):847-57 PMID: 7697715
  32. Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation.
    J Biosci Bioeng. 2007 Jul;104(1):34-41 PMID: 17697981
  33. Suppression of the floral activator Hd3a is the principal cause of the night break effect in rice.
    Plant Cell. 2005 Dec;17(12):3326-36 PMID: 16272430
  34. Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions.
    Plant Cell Physiol. 2002 Oct;43(10):1096-105 PMID: 12407188
  35. Analysis of flowering time control in Arabidopsis by comparison of double and triple mutants.
    Plant Physiol. 2001 Jul;126(3):1085-91 PMID: 11457959
  36. Hd3a and RFT1 are essential for flowering in rice.
    Development. 2008 Feb;135(4):767-74 PMID: 18223202
  37. The quest for florigen: a review of recent progress.
    J Exp Bot. 2006;57(13):3395-403 PMID: 17030536
  38. The protein kinase CK2 is involved in regulation of circadian rhythms in Arabidopsis.
    Proc Natl Acad Sci U S A. 1999 Oct 26;96(22):12362-6 PMID: 10535927
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
1091-6490
Published
2008-09-02
Epub
2008-00-25
Pages
12915-20
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC2529042
Subset
IM
Databases
GENBANK
FJ009578, FJ009579
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