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PMID: 19154179 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

NMR structure determination of a segmentally labeled glycoprotein using in vitro glycosylation.

Journal of the American Chemical Society ·Vol. 131 ·No. 3 ·2009-01-28 ·Pages 1274-81

Slynko V, Schubert M, Numao S, Kowarik M, Aebi M, Allain FH

Abstract

Although there is great interest in three-dimensional structures of glycoproteins and complex oligosaccharides, their structural determination have been hampered by inhomogeneous and incomplete glycosylation, poor expression, low tendency to crystallize, and severe chemical shift overlap. Using segmental labeling of the glycan and the protein component by in vitro glycosylation, we developed a novel method of NMR structural determination that overcomes some of these problems. Highly homogeneously glycosylated proteins in milligram amounts can be obtained. This allowed the determination of the structure of an N-linked glycoprotein from Campylobacter jejuni. The glycosylation acceptor site was found to be in a flexible loop. The presented methodology extends the observable NOE distance limit of oligosaccharides significantly over 4 A, resulting in a high number of distance restraints per glycosidic linkage. A well-defined glycan structure was obtained.

MeSH Terms
Amino Acid Sequence Campylobacter jejuni/chemistry Glycoproteins/analysis,chemistry Glycosylation Magnetic Resonance Spectroscopy/methods Models, Molecular Protein Structure, Tertiary Stereoisomerism
Chemicals
Glycoproteins
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Slynko Vadim
Institute of Molecular Biology and Biophysics, ETH Zurich, CH-8093 Zurich, Switzerland.
Schubert Mario
Numao Shin
Kowarik Michael
Aebi Markus
Allain Frédéric H-T
Article Info
Journal
Journal of the American Chemical Society
Abbr.
J Am Chem Soc
ISSN
1520-5126
Published
2009-01-28
Pages
1274-81
Language
English
Region
United States
NLM ID
7503056
Subset
IM
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