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PMID: 19169416 Published · ppublish English Journal Article

High Dimensional Classification Using Features Annealed Independence Rules.

Annals of statistics ·Vol. 36 ·No. 6 ·2008-00-00 ·Pages 2605-2637

Fan J, Fan Y

Abstract

Classification using high-dimensional features arises frequently in many contemporary statistical studies such as tumor classification using microarray or other high-throughput data. The impact of dimensionality on classifications is largely poorly understood. In a seminal paper, Bickel and Levina (2004) show that the Fisher discriminant performs poorly due to diverging spectra and they propose to use the independence rule to overcome the problem. We first demonstrate that even for the independence classification rule, classification using all the features can be as bad as the random guessing due to noise accumulation in estimating population centroids in high-dimensional feature space. In fact, we demonstrate further that almost all linear discriminants can perform as bad as the random guessing. Thus, it is paramountly important to select a subset of important features for high-dimensional classification, resulting in Features Annealed Independence Rules (FAIR). The conditions under which all the important features can be selected by the two-sample t-statistic are established. The choice of the optimal number of features, or equivalently, the threshold value of the test statistics are proposed based on an upper bound of the classification error. Simulation studies and real data analysis support our theoretical results and demonstrate convincingly the advantage of our new classification procedure.

Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Fan Jianqing
Princeton University.
Fan Yingying
References (11)
11 references, click to expand
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Article Info
Journal
Annals of statistics
Abbr.
Ann Stat
ISSN
0090-5364
Published
2008-00-00
Pages
2605-2637
Language
English
Region
United States
NLM ID
0365252
PMCID
PMC2630123
Grants
NIGMS NIH HHS · R01 GM072611 · United States
NIGMS NIH HHS · R01 GM072611-01A1 · United States
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