Home LiteratureArticle Details
PMID: 19543231 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Review

Linear polyubiquitination: a new regulator of NF-kappaB activation.

EMBO reports ·Vol. 10 ·No. 7 ·2009-07-00 ·Pages 706-13

Iwai K, Tokunaga F

Abstract

The ubiquitin-conjugation system regulates a vast range of biological phenomena by affecting protein function mostly through polyubiquitin conjugation. The type of polyubiquitin chain that is generated seems to determine how conjugated proteins are regulated, as they are recognized specifically by proteins that contain chain-specific ubiquitin-binding motifs. An enzyme complex that catalyses the formation of newly described linear polyubiquitin chains--known as linear ubiquitin chain-assembly complex (LUBAC)--has recently been characterized, as has a particular ubiquitin-binding domain that specifically recognizes linear chains. Both have been shown to have crucial roles in the canonical nuclear factor-kappaB (NF-kappaB)-activation pathway. The ubiquitin system is intimately involved in regulating the NF-kappaB pathway, and the regulatory roles of K63-linked chains have been studied extensively. However, the role of linear chains in this process is only now emerging. This article discusses the possible mechanisms underlying linear polyubiquitin-mediated activation of NF-kappaB, and the different roles that K63-linked and linear chains have in NF-kappaB activation. Future directions for linear polyubiquitin research are also discussed.

MeSH Terms
Amino Acid Motifs Animals Humans NF-kappa B/metabolism Polyubiquitin/metabolism Ubiquitination
Chemicals
NF-kappa B Polyubiquitin
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Iwai Kazuhiro
Department of Biophysics and Biochemistry, Graduate School of Medicine and Cell Biology, Osaka University, Osaka, Japan. [email protected]
Tokunaga Fuminori
References (53)
53 references, click to expand
  1. Nonproteolytic functions of ubiquitin in cell signaling.
    Mol Cell. 2009 Feb 13;33(3):275-86 PMID: 19217402
  2. Polyubiquitin binding and disassembly by deubiquitinating enzymes.
    Chem Rev. 2009 Apr;109(4):1495-508 PMID: 19243136
  3. Regulation of membrane protein transport by ubiquitin and ubiquitin-binding proteins.
    Annu Rev Cell Dev Biol. 2003;19:141-72 PMID: 14570567
  4. A heat-stable polypeptide component of an ATP-dependent proteolytic system from reticulocytes.
    Biochem Biophys Res Commun. 1978 Apr 28;81(4):1100-5 PMID: 666810
  5. CYLD is a deubiquitinating enzyme that negatively regulates NF-kappaB activation by TNFR family members.
    Nature. 2003 Aug 14;424(6950):793-6 PMID: 12917689
  6. ABIN-1 is a ubiquitin sensor that restricts cell death and sustains embryonic development.
    Nature. 2009 Feb 12;457(7231):906-9 PMID: 19060883
  7. Distinct regulation of Ubc13 functions by the two ubiquitin-conjugating enzyme variants Mms2 and Uev1A.
    J Cell Biol. 2005 Aug 29;170(5):745-55 PMID: 16129784
  8. Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation.
    Cell. 2009 Apr 3;137(1):133-45 PMID: 19345192
  9. Functional redundancy of the zinc fingers of A20 for inhibition of NF-kappaB activation and protein-protein interactions.
    FEBS Lett. 2001 Jun 1;498(1):93-7 PMID: 11389905
  10. Structure of a NEMO/IKK-associating domain reveals architecture of the interaction site.
    Structure. 2008 May;16(5):798-808 PMID: 18462684
  11. Ubiquitin in NF-kappaB signaling.
    Chem Rev. 2009 Apr;109(4):1549-60 PMID: 19281271
  12. The yeast polyubiquitin gene is essential for resistance to high temperatures, starvation, and other stresses.
    Cell. 1987 Mar 27;48(6):1035-46 PMID: 3030556
  13. Key function for the Ubc13 E2 ubiquitin-conjugating enzyme in immune receptor signaling.
    Nat Immunol. 2006 Sep;7(9):962-70 PMID: 16862162
  14. Lingering mysteries of ubiquitin-chain assembly.
    Cell. 2006 Jan 13;124(1):27-34 PMID: 16413479
  15. The ubiquitin binding domain ZnF UBP recognizes the C-terminal diglycine motif of unanchored ubiquitin.
    Cell. 2006 Mar 24;124(6):1197-208 PMID: 16564012
  16. Structural basis for recognition of diubiquitins by NEMO.
    Mol Cell. 2009 Mar 13;33(5):602-15 PMID: 19185524
  17. TAK1, but not TAB1 or TAB2, plays an essential role in multiple signaling pathways in vivo.
    Genes Dev. 2005 Nov 15;19(22):2668-81 PMID: 16260493
  18. Noncanonical MMS2-encoded ubiquitin-conjugating enzyme functions in assembly of novel polyubiquitin chains for DNA repair.
    Cell. 1999 Mar 5;96(5):645-53 PMID: 10089880
  19. Detecting and measuring cotranslational protein degradation in vivo.
    Science. 2000 Sep 22;289(5487):2117-20 PMID: 11000112
  20. Early hydrogen-bonding events in the folding reaction of ubiquitin.
    Proc Natl Acad Sci U S A. 1992 Mar 15;89(6):2017-21 PMID: 1312711
  21. Polyubiquitin chains: polymeric protein signals.
    Curr Opin Chem Biol. 2004 Dec;8(6):610-6 PMID: 15556404
  22. The mouse polyubiquitin gene UbC is essential for fetal liver development, cell-cycle progression and stress tolerance.
    EMBO J. 2007 Jun 6;26(11):2693-706 PMID: 17491588
  23. A multiubiquitin chain is confined to specific lysine in a targeted short-lived protein.
    Science. 1989 Mar 24;243(4898):1576-83 PMID: 2538923
  24. Essential function for the kinase TAK1 in innate and adaptive immune responses.
    Nat Immunol. 2005 Nov;6(11):1087-95 PMID: 16186825
  25. The tumour suppressor CYLD negatively regulates NF-kappaB signalling by deubiquitination.
    Nature. 2003 Aug 14;424(6950):801-5 PMID: 12917691
  26. The role of ubiquitination in Drosophila innate immunity.
    J Biol Chem. 2005 Oct 7;280(40):34048-55 PMID: 16081424
  27. RBCK1 negatively regulates tumor necrosis factor- and interleukin-1-triggered NF-kappaB activation by targeting TAB2/3 for degradation.
    J Biol Chem. 2007 Jun 8;282(23):16776-82 PMID: 17449468
  28. A ubiquitin mutant with specific defects in DNA repair and multiubiquitination.
    Mol Cell Biol. 1995 Mar;15(3):1265-73 PMID: 7862120
  29. Sensing of Lys 63-linked polyubiquitination by NEMO is a key event in NF-kappaB activation [corrected].
    Nat Cell Biol. 2006 Apr;8(4):398-406 PMID: 16547522
  30. Modification of proteins by ubiquitin and ubiquitin-like proteins.
    Annu Rev Cell Dev Biol. 2006;22:159-80 PMID: 16753028
  31. Atypical ubiquitin chains: new molecular signals. 'Protein Modifications: Beyond the Usual Suspects' review series.
    EMBO Rep. 2008 Jun;9(6):536-42 PMID: 18516089
  32. Activation of IKK by TNFalpha requires site-specific ubiquitination of RIP1 and polyubiquitin binding by NEMO.
    Mol Cell. 2006 Apr 21;22(2):245-57 PMID: 16603398
  33. Structural mechanisms underlying posttranslational modification by ubiquitin-like proteins.
    Annu Rev Biophys Biomol Struct. 2007;36:131-50 PMID: 17477837
  34. A proteomics approach to understanding protein ubiquitination.
    Nat Biotechnol. 2003 Aug;21(8):921-6 PMID: 12872131
  35. Structure of a BRCA1-BARD1 heterodimeric RING-RING complex.
    Nat Struct Biol. 2001 Oct;8(10):833-7 PMID: 11573085
  36. Specific recognition of linear ubiquitin chains by NEMO is important for NF-kappaB activation.
    Cell. 2009 Mar 20;136(6):1098-109 PMID: 19303852
  37. Cutting Edge: Pivotal function of Ubc13 in thymocyte TCR signaling.
    J Immunol. 2006 Dec 1;177(11):7520-4 PMID: 17114420
  38. TAK1 is a ubiquitin-dependent kinase of MKK and IKK.
    Nature. 2001 Jul 19;412(6844):346-51 PMID: 11460167
  39. The ubiquitin-proteasome proteolytic pathway: destruction for the sake of construction.
    Physiol Rev. 2002 Apr;82(2):373-428 PMID: 11917093
  40. Mechanism of ubiquitin-chain formation by the human anaphase-promoting complex.
    Cell. 2008 May 16;133(4):653-65 PMID: 18485873
  41. A 25-kilodalton ubiquitin carrier protein (E2) catalyzes multi-ubiquitin chain synthesis via lysine 48 of ubiquitin.
    J Biol Chem. 1990 Dec 15;265(35):21835-42 PMID: 2174887
  42. Molecular discrimination of structurally equivalent Lys 63-linked and linear polyubiquitin chains.
    EMBO Rep. 2009 May;10(5):466-73 PMID: 19373254
  43. Ubiquitin binding mediates the NF-kappaB inhibitory potential of ABIN proteins.
    Oncogene. 2008 Jun 12;27(26):3739-45 PMID: 18212736
  44. Finding NEMO by K63-linked polyubiquitin chain.
    Cell Death Differ. 2006 Nov;13(11):1835-8 PMID: 16858426
  45. Mutual regulation of conventional protein kinase C and a ubiquitin ligase complex.
    Biochem Biophys Res Commun. 2006 Dec 15;351(2):340-7 PMID: 17069764
  46. A ubiquitin ligase complex assembles linear polyubiquitin chains.
    EMBO J. 2006 Oct 18;25(20):4877-87 PMID: 17006537
  47. Essential cytoplasmic translocation of a cytokine receptor-assembled signaling complex.
    Science. 2008 Aug 1;321(5889):663-8 PMID: 18635759
  48. Involvement of linear polyubiquitylation of NEMO in NF-kappaB activation.
    Nat Cell Biol. 2009 Feb;11(2):123-32 PMID: 19136968
  49. Loss of the cylindromatosis tumour suppressor inhibits apoptosis by activating NF-kappaB.
    Nature. 2003 Aug 14;424(6950):797-801 PMID: 12917690
  50. Characteristics of mycobacterial infection in patients with immunodeficiency and nuclear factor-kappaB essential modulator mutation, with or without ectodermal dysplasia.
    J Am Acad Dermatol. 2004 Nov;51(5):718-22 PMID: 15523349
  51. Regulation and function of IKK and IKK-related kinases.
    Sci STKE. 2006 Oct 17;2006(357):re13 PMID: 17047224
  52. Activation of the IkappaB kinase complex by TRAF6 requires a dimeric ubiquitin-conjugating enzyme complex and a unique polyubiquitin chain.
    Cell. 2000 Oct 13;103(2):351-61 PMID: 11057907
  53. Shared principles in NF-kappaB signaling.
    Cell. 2008 Feb 8;132(3):344-62 PMID: 18267068
Article Info
Journal
EMBO reports
Abbr.
EMBO Rep
ISSN
1469-3178
Published
2009-07-00
Epub
2009-00-19
Pages
706-13
Language
English
Region
England
NLM ID
100963049
PMCID
PMC2727427
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]