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PMID: 19629035 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

PARP is activated at stalled forks to mediate Mre11-dependent replication restart and recombination.

The EMBO journal ·Vol. 28 ·No. 17 ·2009-09-02 ·Pages 2601-15

Bryant HE, Petermann E, Schultz N, Jemth AS, Loseva O, Issaeva N, Johansson F, Fernandez S, McGlynn P, Helleday T

Abstract

If replication forks are perturbed, a multifaceted response including several DNA repair and cell cycle checkpoint pathways is activated to ensure faithful DNA replication. Here, we show that poly(ADP-ribose) polymerase 1 (PARP1) binds to and is activated by stalled replication forks that contain small gaps. PARP1 collaborates with Mre11 to promote replication fork restart after release from replication blocks, most likely by recruiting Mre11 to the replication fork to promote resection of DNA. Both PARP1 and PARP2 are required for hydroxyurea-induced homologous recombination to promote cell survival after replication blocks. Together, our data suggest that PARP1 and PARP2 detect disrupted replication forks and attract Mre11 for end processing that is required for subsequent recombination repair and restart of replication forks.

MeSH Terms
Animals Cell Cycle Proteins/metabolism Cells, Cultured Cricetinae Cricetulus DNA Repair DNA Replication/physiology DNA-Binding Proteins/metabolism Fluorescent Antibody Technique Poly(ADP-ribose) Polymerases/metabolism Recombination, Genetic/physiology
Chemicals
Cell Cycle Proteins DNA-Binding Proteins Poly(ADP-ribose) Polymerases
Authors & Affiliations
10 authors, click to expand affiliations / ORCID
Bryant Helen E
The Institute for Cancer Studies, University of Sheffield, Sheffield, UK.
Petermann Eva
Schultz Niklas
Jemth Ann-Sofie
Loseva Olga
Issaeva Natalia
Johansson Fredrik
Fernandez Serena
McGlynn Peter
Helleday Thomas
References (65)
65 references, click to expand
  1. A CHO-cell strain having hypersensitivity to mutagens, a defect in DNA strand-break repair, and an extraordinary baseline frequency of sister-chromatid exchange.
    Mutat Res. 1982 Aug;95(2-3):427-40 PMID: 6889677
  2. Human CtIP promotes DNA end resection.
    Nature. 2007 Nov 22;450(7169):509-14 PMID: 17965729
  3. DNA double-strand breaks associated with replication forks are predominantly repaired by homologous recombination involving an exchange mechanism in mammalian cells.
    J Mol Biol. 2001 Apr 13;307(5):1235-45 PMID: 11292338
  4. Functional interaction between PARP-1 and PARP-2 in chromosome stability and embryonic development in mouse.
    EMBO J. 2003 May 1;22(9):2255-63 PMID: 12727891
  5. ATM and ATR promote Mre11 dependent restart of collapsed replication forks and prevent accumulation of DNA breaks.
    EMBO J. 2006 Apr 19;25(8):1764-74 PMID: 16601701
  6. Conservative homologous recombination preferentially repairs DNA double-strand breaks in the S phase of the cell cycle in human cells.
    Nucleic Acids Res. 2004 Jul 13;32(12):3683-8 PMID: 15252152
  7. Nuclear protein modification and chromatin substructure. 3. Relationship between poly(adenosine diphosphate) ribosylation and different functional forms of chromatin.
    Biochemistry. 1979 Mar 20;18(6):983-90 PMID: 106878
  8. Poly(ADP-ribosyl)ation reactions in the regulation of nuclear functions.
    Biochem J. 1999 Sep 1;342 ( Pt 2):249-68 PMID: 10455009
  9. Ablation of PARP-1 does not interfere with the repair of DNA double-strand breaks, but compromises the reactivation of stalled replication forks.
    Oncogene. 2004 May 6;23(21):3872-82 PMID: 15021907
  10. Oncogene-induced senescence is a DNA damage response triggered by DNA hyper-replication.
    Nature. 2006 Nov 30;444(7119):638-42 PMID: 17136094
  11. Pathways for mitotic homologous recombination in mammalian cells.
    Mutat Res. 2003 Nov 27;532(1-2):103-15 PMID: 14643432
  12. Quantitation of intracellular NAD(P)H can monitor an imbalance of DNA single strand break repair in base excision repair deficient cells in real time.
    Nucleic Acids Res. 2003 Sep 1;31(17):e104 PMID: 12930978
  13. Claspin promotes normal replication fork rates in human cells.
    Mol Biol Cell. 2008 Jun;19(6):2373-8 PMID: 18353973
  14. Poly(ADP-ribose) polymerase (PARP-1) has a controlling role in homologous recombination.
    Nucleic Acids Res. 2003 Sep 1;31(17):4959-64 PMID: 12930944
  15. Poly(ADP-ribose) polymerase stimulates DNA polymerase alpha by physical association.
    J Biol Chem. 1993 Jan 5;268(1):93-9 PMID: 8416979
  16. Effects of thymidine on deoxyribonucleoside triphosphate pools and deoxyribonucleic acid synthesis in Chinese hamster ovary cells.
    J Biol Chem. 1973 Jun 10;248(11):3904-9 PMID: 4736079
  17. Visualization of altered replication dynamics after DNA damage in human cells.
    J Biol Chem. 2004 May 7;279(19):20067-75 PMID: 14982920
  18. Targeting the DNA repair defect in BRCA mutant cells as a therapeutic strategy.
    Nature. 2005 Apr 14;434(7035):917-21 PMID: 15829967
  19. Poly(ADP-ribose) polymerase 1 accelerates single-strand break repair in concert with poly(ADP-ribose) glycohydrolase.
    Mol Cell Biol. 2007 Aug;27(15):5597-605 PMID: 17548475
  20. Sensing DNA damage through ATRIP recognition of RPA-ssDNA complexes.
    Science. 2003 Jun 6;300(5625):1542-8 PMID: 12791985
  21. Temporal separation of replication and recombination requires the intra-S checkpoint.
    J Cell Biol. 2005 Feb 14;168(4):537-44 PMID: 15716375
  22. Single-strand break repair and genetic disease.
    Nat Rev Genet. 2008 Aug;9(8):619-31 PMID: 18626472
  23. ATM is required for the cellular response to thymidine induced replication fork stress.
    Hum Mol Genet. 2004 Dec 1;13(23):2937-45 PMID: 15459181
  24. Different roles for nonhomologous end joining and homologous recombination following replication arrest in mammalian cells.
    Mol Cell Biol. 2002 Aug;22(16):5869-78 PMID: 12138197
  25. Rapid activation of ATR by ionizing radiation requires ATM and Mre11.
    J Biol Chem. 2006 Apr 7;281(14):9346-50 PMID: 16431910
  26. Initiation of eukaryotic DNA replication: origin unwinding and sequential chromatin association of Cdc45, RPA, and DNA polymerase alpha.
    Mol Cell. 2000 Apr;5(4):617-27 PMID: 10882098
  27. XRCC3 and Rad51 modulate replication fork progression on damaged vertebrate chromosomes.
    Mol Cell. 2003 Apr;11(4):1109-17 PMID: 12718895
  28. PARP1-dependent kinetics of recruitment of MRE11 and NBS1 proteins to multiple DNA damage sites.
    J Biol Chem. 2008 Jan 11;283(2):1197-208 PMID: 18025084
  29. Specific killing of BRCA2-deficient tumours with inhibitors of poly(ADP-ribose) polymerase.
    Nature. 2005 Apr 14;434(7035):913-7 PMID: 15829966
  30. Functional uncoupling of MCM helicase and DNA polymerase activities activates the ATR-dependent checkpoint.
    Genes Dev. 2005 May 1;19(9):1040-52 PMID: 15833913
  31. The relationship between cell growth, macromolecular synthesis and poly ADP-ribose polymerase in lymphoid cells.
    Exp Cell Res. 1974 Jan;83(1):63-72 PMID: 4360096
  32. Mre11 dimers coordinate DNA end bridging and nuclease processing in double-strand-break repair.
    Cell. 2008 Oct 3;135(1):97-109 PMID: 18854158
  33. Relative affinities of poly(ADP-ribose) polymerase and DNA-dependent protein kinase for DNA strand interruptions.
    Biochim Biophys Acta. 1999 Feb 10;1430(1):119-26 PMID: 10082940
  34. A requirement for PARP-1 for the assembly or stability of XRCC1 nuclear foci at sites of oxidative DNA damage.
    Nucleic Acids Res. 2003 Oct 1;31(19):5526-33 PMID: 14500814
  35. DNA repair pathways as targets for cancer therapy.
    Nat Rev Cancer. 2008 Mar;8(3):193-204 PMID: 18256616
  36. Role of poly(ADP-ribose) formation in DNA repair.
    Nature. 1992 Mar 26;356(6367):356-8 PMID: 1549180
  37. Defects in homologous recombination repair in mismatch-repair-deficient tumour cell lines.
    Hum Mol Genet. 2002 Sep 1;11(18):2189-200 PMID: 12189171
  38. DNA replication and poly(ADP-ribosyl)ation of chromatin.
    Cytobios. 1989;58(236):19-28 PMID: 2512056
  39. Human Rad50 is physically associated with human Mre11: identification of a conserved multiprotein complex implicated in recombinational DNA repair.
    Mol Cell Biol. 1996 Sep;16(9):4832-41 PMID: 8756642
  40. The expression of poly(ADP-ribose) polymerase during differentiation-linked DNA replication reveals that it is a component of the multiprotein DNA replication complex.
    Biochemistry. 1996 Sep 10;35(36):11622-33 PMID: 8794742
  41. The enzymatic and DNA binding activity of PARP-1 are not required for NF-kappa B coactivator function.
    J Biol Chem. 2001 Dec 7;276(49):45588-97 PMID: 11590148
  42. Mre11 nuclease activity has essential roles in DNA repair and genomic stability distinct from ATM activation.
    Cell. 2008 Oct 3;135(1):85-96 PMID: 18854157
  43. PARP-2, A novel mammalian DNA damage-dependent poly(ADP-ribose) polymerase.
    J Biol Chem. 1999 Jun 18;274(25):17860-8 PMID: 10364231
  44. Characterization of homologous recombination induced by replication inhibition in mammalian cells.
    EMBO J. 2001 Jul 16;20(14):3861-70 PMID: 11447127
  45. Chromosomal aberrations in PARP(-/-) mice: genome stabilization in immortalized cells by reintroduction of poly(ADP-ribose) polymerase cDNA.
    Proc Natl Acad Sci U S A. 1999 Nov 9;96(23):13191-6 PMID: 10557296
  46. Poly(ADP-ribose)-binding zinc finger motifs in DNA repair/checkpoint proteins.
    Nature. 2008 Jan 3;451(7174):81-5 PMID: 18172500
  47. Poly(ADP-ribose) polymerase in base excision repair: always engaged, but not essential for DNA damage processing.
    Acta Biochim Pol. 2003;50(1):169-79 PMID: 12673357
  48. A partial hprt gene duplication generated by non-homologous recombination in V79 Chinese hamster cells is eliminated by homologous recombination.
    J Mol Biol. 1998 Jun 19;279(4):687-94 PMID: 9642052
  49. Primase couples leading- and lagging-strand DNA synthesis from oriC.
    J Biol Chem. 1994 Feb 25;269(8):6058-63 PMID: 8119951
  50. Replication protein A and the Mre11.Rad50.Nbs1 complex co-localize and interact at sites of stalled replication forks.
    J Biol Chem. 2004 Aug 13;279(33):34802-10 PMID: 15180989
  51. Changes of deoxyribonucleoside triphosphate pools induced by hydroxyurea and their relation to DNA synthesis.
    J Biol Chem. 1986 Dec 5;261(34):16037-42 PMID: 3536919
  52. Mre11 protein complex prevents double-strand break accumulation during chromosomal DNA replication.
    Mol Cell. 2001 Jul;8(1):137-47 PMID: 11511367
  53. Oncogene-induced senescence is part of the tumorigenesis barrier imposed by DNA damage checkpoints.
    Nature. 2006 Nov 30;444(7119):633-7 PMID: 17136093
  54. PARP is important for genomic stability but dispensable in apoptosis.
    Genes Dev. 1997 Sep 15;11(18):2347-58 PMID: 9308963
  55. The structure-specific endonuclease Mus81 contributes to replication restart by generating double-strand DNA breaks.
    Nat Struct Mol Biol. 2007 Nov;14(11):1096-104 PMID: 17934473
  56. Functional association of poly(ADP-ribose) polymerase with DNA polymerase alpha-primase complex: a link between DNA strand break detection and DNA replication.
    Nucleic Acids Res. 1998 Apr 15;26(8):1891-8 PMID: 9518481
  57. Sister chromatid gene conversion is a prominent double-strand break repair pathway in mammalian cells.
    EMBO J. 2000 Jul 3;19(13):3398-407 PMID: 10880452
  58. A method to monitor replication fork progression in mammalian cells: nucleotide excision repair enhances and homologous recombination delays elongation along damaged DNA.
    Nucleic Acids Res. 2004 Nov 10;32(20):e157 PMID: 15537835
  59. Replisome assembly and the direct restart of stalled replication forks.
    Nat Rev Mol Cell Biol. 2006 Dec;7(12):932-43 PMID: 17139333
  60. Positive torsional strain causes the formation of a four-way junction at replication forks.
    J Biol Chem. 2001 Jan 26;276(4):2790-6 PMID: 11056156
  61. Spontaneous homologous recombination is induced by collapsed replication forks that are caused by endogenous DNA single-strand breaks.
    Mol Cell Biol. 2005 Aug;25(16):7158-69 PMID: 16055725
  62. The DNA replication checkpoint response stabilizes stalled replication forks.
    Nature. 2001 Aug 2;412(6846):557-61 PMID: 11484058
  63. Inhibitors of poly(adenosine diphosphate ribose) polymerase induce sister chromatid exchanges.
    Biochem Biophys Res Commun. 1980 Dec 31;97(4):1311-6 PMID: 6260088
  64. Formation of Holliday junctions by regression of nascent DNA in intermediates containing stalled replication forks: RecG stimulates regression even when the DNA is negatively supercoiled.
    Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8235-40 PMID: 11459958
  65. Inhibition of poly (ADP-ribose) polymerase activates ATM which is required for subsequent homologous recombination repair.
    Nucleic Acids Res. 2006 Mar 23;34(6):1685-91 PMID: 16556909
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
1460-2075
Published
2009-09-02
Epub
2009-00-23
Pages
2601-15
Language
English
Region
England
NLM ID
8208664
PMCID
PMC2738702
Subset
IM
Grants
Medical Research Council · G0000076 · United Kingdom
Medical Research Council · G0700730 · United Kingdom
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