Home LiteratureArticle Details
PMID: 19763160 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Genetic analysis of variation in human meiotic recombination.

PLoS genetics ·Vol. 5 ·No. 9 ·2009-09-00 ·Pages e1000648

Chowdhury R, Bois PR, Feingold E, Sherman SL, Cheung VG

Abstract

The number of recombination events per meiosis varies extensively among individuals. This recombination phenotype differs between female and male, and also among individuals of each gender. In this study, we used high-density SNP genotypes of over 2,300 individuals and their offspring in two datasets to characterize recombination landscape and to map the genetic variants that contribute to variation in recombination phenotypes. We found six genetic loci that are associated with recombination phenotypes. Two of these (RNF212 and an inversion on chromosome 17q21.31) were previously reported in the Icelandic population, and this is the first replication in any other population. Of the four newly identified loci (KIAA1462, PDZK1, UGCG, NUB1), results from expression studies provide support for their roles in meiosis. Each of the variants that we identified explains only a small fraction of the individual variation in recombination. Notably, we found different sequence variants associated with female and male recombination phenotypes, suggesting that they are regulated by different genes. Characterization of genetic variants that influence natural variation in meiotic recombination will lead to a better understanding of normal meiotic events as well as of non-disjunction, the primary cause of pregnancy loss.

MeSH Terms
Autistic Disorder/genetics Female Gene Expression Regulation Genetic Markers Genetic Variation Genome, Human/genetics Genome-Wide Association Study Humans Male Meiosis/genetics Myocardium/metabolism Phenotype Quantitative Trait Loci/genetics Recombination, Genetic Reproducibility of Results
Chemicals
Genetic Markers
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Chowdhury Reshmi
Department of Pediatrics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Bois Philippe R J
Feingold Eleanor
Sherman Stephanie L
Cheung Vivian G
Conflict of Interest

The authors have declared that no competing interests exist.

References (21)
21 references, click to expand
  1. High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans.
    Science. 2008 Mar 7;319(5868):1395-8 PMID: 18239090
  2. A high-resolution recombination map of the human genome.
    Nat Genet. 2002 Jul;31(3):241-7 PMID: 12053178
  3. Sequence variants in the RNF212 gene associate with genome-wide recombination rate.
    Science. 2008 Mar 7;319(5868):1398-401 PMID: 18239089
  4. Comprehensive human genetic maps: individual and sex-specific variation in recombination.
    Am J Hum Genet. 1998 Sep;63(3):861-9 PMID: 9718341
  5. The emerging role of PDZ adapter proteins for regulation of intestinal ion transport.
    Am J Physiol Gastrointest Liver Physiol. 2006 Nov;291(5):G766-77 PMID: 16798722
  6. Polymorphic variation in human meiotic recombination.
    Am J Hum Genet. 2007 Mar;80(3):526-30 PMID: 17273974
  7. 'Side Population' cells in adult mouse testis express Bcrp1 gene and are enriched in spermatogonia and germinal stem cells.
    Development. 2004 Jan;131(2):479-87 PMID: 14681185
  8. Initiation of meiotic recombination by formation of DNA double-strand breaks: mechanism and regulation.
    Biochem Soc Trans. 2006 Aug;34(Pt 4):523-5 PMID: 16856850
  9. On Spo16 and the coefficient of coincidence.
    Genetics. 2009 Jan;181(1):327-30 PMID: 19001288
  10. Effect of meiotic recombination on the production of aneuploid gametes in humans.
    Cytogenet Genome Res. 2005;111(3-4):250-5 PMID: 16192701
  11. Large-scale analysis of the human and mouse transcriptomes.
    Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4465-70 PMID: 11904358
  12. Flow cytometric characterization of viable meiotic and postmeiotic cells by Hoechst 33342 in mouse spermatogenesis.
    Cytometry A. 2005 May;65(1):40-9 PMID: 15779065
  13. Cyclin-dependent kinase directly regulates initiation of meiotic recombination.
    Cell. 2006 Jun 30;125(7):1321-32 PMID: 16814718
  14. Association between microdeletion and microduplication at 16p11.2 and autism.
    N Engl J Med. 2008 Feb 14;358(7):667-75 PMID: 18184952
  15. NCBI GEO: mining tens of millions of expression profiles--database and tools update.
    Nucleic Acids Res. 2007 Jan;35(Database issue):D760-5 PMID: 17099226
  16. Crossover interference underlies sex differences in recombination rates.
    Trends Genet. 2007 Nov;23(11):539-42 PMID: 17964681
  17. PLINK: a tool set for whole-genome association and population-based linkage analyses.
    Am J Hum Genet. 2007 Sep;81(3):559-75 PMID: 17701901
  18. A common inversion under selection in Europeans.
    Nat Genet. 2005 Feb;37(2):129-37 PMID: 15654335
  19. A high-resolution single nucleotide polymorphism genetic map of the mouse genome.
    PLoS Biol. 2006 Nov;4(12):e395 PMID: 17105354
  20. The origin of human aneuploidy: where we have been, where we are going.
    Hum Mol Genet. 2007 Oct 15;16 Spec No. 2:R203-8 PMID: 17911163
  21. Epidemiological approaches to heart disease: the Framingham Study.
    Am J Public Health Nations Health. 1951 Mar;41(3):279-81 PMID: 14819398
Article Info
Journal
PLoS genetics
Abbr.
PLoS Genet
ISSN
1553-7404
Published
2009-09-00
Epub
2009-00-18
Pages
e1000648
Language
English
Region
United States
NLM ID
101239074
PMCID
PMC2730532
Subset
IM
Grants
Howard Hughes Medical Institute · United States
NHGRI NIH HHS · R01 HG001880 · United States
NHGRI NIH HHS · HG01880 · United States
NICHD NIH HHS · R01 HD057029 · United States
NHGRI NIH HHS · R01 HG001880-09S1 · United States
NICHD NIH HHS · HD057029 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]