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PMID: 19829058 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Review

Spliceosomes walk the line: splicing errors and their impact on cellular function.

RNA biology ·Vol. 6 ·No. 5 ·2009-00-00 ·Pages 526-30

Hsu SN, Hertel KJ

Abstract

The splicing of nuclear pre-mRNAs is a fundamental process required for the expression of most metazoan genes. The majority of the approximately 25,000 genes encoded by the human genome has been shown to produce more than one kind of transcripts through alternative splicing. Alternative splicing of pre-mRNAs can lead to the production of multiple protein isoforms from a single gene, significantly enriching the proteomic diversity of higher eukaryotic organisms. Because regulation of this process determines the timing and location that a particular protein isoform is produced, changes of alternative splicing patterns have the potential to modulate many cellular activities. Consequently, pre-mRNA splicing must occur with a high degree of specificity and fidelity to ensure the appropriate expression of functional mRNAs. Here we review recent progress made in understanding the extent of alternative splicing within the human genome with particular emphasis on splicing fidelity.

MeSH Terms
Alternative Splicing Animals Genome, Human Humans RNA Splicing Spliceosomes/physiology
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Hsu Shu-Ning
Department of Microbiology & Molecular Genetics, University of California, Irvine, CA, USA.
Hertel Klemens J
References (39)
39 references, click to expand
  1. A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome.
    Science. 2008 Aug 15;321(5891):956-60 PMID: 18599741
  2. The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome.
    Nucleic Acids Res. 2004 Aug 03;32(13):3977-83 PMID: 15292448
  3. How prevalent is functional alternative splicing in the human genome?
    Trends Genet. 2004 Feb;20(2):68-71 PMID: 14746986
  4. The nonsense-mediated decay RNA surveillance pathway.
    Annu Rev Biochem. 2007;76:51-74 PMID: 17352659
  5. RNA polymerase II subunit Rpb9 is important for transcriptional fidelity in vivo.
    Proc Natl Acad Sci U S A. 2006 Feb 28;103(9):3268-73 PMID: 16492753
  6. A genomic view of alternative splicing.
    Nat Genet. 2002 Jan;30(1):13-9 PMID: 11753382
  7. Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays.
    Science. 2003 Dec 19;302(5653):2141-4 PMID: 14684825
  8. Fidelity in protein synthesis.
    Curr Biol. 2005 Jul 26;15(14):R536-40 PMID: 16051156
  9. Alternative pre-mRNA splicing and proteome expansion in metazoans.
    Nature. 2002 Jul 11;418(6894):236-43 PMID: 12110900
  10. Pre-mRNA splicing and human disease.
    Genes Dev. 2003 Feb 15;17(4):419-37 PMID: 12600935
  11. Drosophila N-cadherin functions in the first stage of the two-stage layer-selection process of R7 photoreceptor afferents.
    Development. 2005 Mar;132(5):953-63 PMID: 15673571
  12. Finishing the euchromatic sequence of the human genome.
    Nature. 2004 Oct 21;431(7011):931-45 PMID: 15496913
  13. Splice-site pairing is an intrinsically high fidelity process.
    Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1766-71 PMID: 19179398
  14. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.
    Nat Genet. 2008 Dec;40(12):1413-5 PMID: 18978789
  15. Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons.
    Proc Natl Acad Sci U S A. 2006 Sep 5;103(36):13427-32 PMID: 16938881
  16. Drosophila Dscam is an axon guidance receptor exhibiting extraordinary molecular diversity.
    Cell. 2000 Jun 9;101(6):671-84 PMID: 10892653
  17. Endonucleolytic cleavage of eukaryotic mRNAs with stalls in translation elongation.
    Nature. 2006 Mar 23;440(7083):561-4 PMID: 16554824
  18. Identification of a rapid mammalian deadenylation-dependent decay pathway and its inhibition by a viral RNA element.
    Mol Cell. 2006 Dec 28;24(6):943-53 PMID: 17189195
  19. The mutational spectrum of single base-pair substitutions in mRNA splice junctions of human genes: causes and consequences.
    Hum Genet. 1992 Sep-Oct;90(1-2):41-54 PMID: 1427786
  20. Alternative splicing in disease and therapy.
    Nat Biotechnol. 2004 May;22(5):535-46 PMID: 15122293
  21. Mechanisms of alternative pre-messenger RNA splicing.
    Annu Rev Biochem. 2003;72:291-336 PMID: 12626338
  22. The structure and function of proteins involved in mammalian pre-mRNA splicing.
    Annu Rev Biochem. 1996;65:367-409 PMID: 8811184
  23. Tau exon 10 alternative splicing and tauopathies.
    Mol Neurodegener. 2008 Jul 10;3:8 PMID: 18616804
  24. Detection and evaluation of intron retention events in the human transcriptome.
    RNA. 2004 May;10(5):757-65 PMID: 15100430
  25. Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology.
    Cell. 2000 Oct 27;103(3):367-70 PMID: 11081623
  26. An mRNA surveillance mechanism that eliminates transcripts lacking termination codons.
    Science. 2002 Mar 22;295(5563):2258-61 PMID: 11910109
  27. Technologies for the global discovery and analysis of alternative splicing.
    Adv Exp Med Biol. 2007;623:64-84 PMID: 18380341
  28. Alternative isoform regulation in human tissue transcriptomes.
    Nature. 2008 Nov 27;456(7221):470-6 PMID: 18978772
  29. Alternative splicing: increasing diversity in the proteomic world.
    Trends Genet. 2001 Feb;17(2):100-7 PMID: 11173120
  30. ASAP: the Alternative Splicing Annotation Project.
    Nucleic Acids Res. 2003 Jan 1;31(1):101-5 PMID: 12519958
  31. Conserved alternative splicing and expression patterns of arthropod N-cadherin.
    PLoS Genet. 2009 Apr;5(4):e1000441 PMID: 19343204
  32. Exon ligation is proofread by the DExD/H-box ATPase Prp22p.
    Nat Struct Mol Biol. 2006 Jun;13(6):482-90 PMID: 16680161
  33. Alternative splicing and evolution.
    Bioessays. 2003 Nov;25(11):1031-4 PMID: 14579243
  34. ASD: the Alternative Splicing Database.
    Nucleic Acids Res. 2004 Jan 1;32(Database issue):D64-9 PMID: 14681360
  35. Listening to silence and understanding nonsense: exonic mutations that affect splicing.
    Nat Rev Genet. 2002 Apr;3(4):285-98 PMID: 11967553
  36. Fidelity of RNA polymerase II transcription controlled by elongation factor TFIIS.
    Proc Natl Acad Sci U S A. 1996 Nov 26;93(24):13677-82 PMID: 8942993
  37. Alternative splicing of the Drosophila Dscam pre-mRNA is both temporally and spatially regulated.
    Genetics. 2001 Oct;159(2):599-608 PMID: 11606537
  38. Opposing classes of prp8 alleles modulate the transition between the catalytic steps of pre-mRNA splicing.
    Nat Struct Mol Biol. 2007 Jun;14(6):519-26 PMID: 17486100
  39. Genome-wide detection of alternative splicing in expressed sequences of human genes.
    Nucleic Acids Res. 2001 Jul 1;29(13):2850-9 PMID: 11433032
Article Info
Journal
RNA biology
Abbr.
RNA Biol
ISSN
1555-8584
Published
2009-00-00
Epub
2009-00-18
Pages
526-30
Language
English
Region
United States
NLM ID
101235328
PMCID
PMC3912188
Subset
IM
Grants
NIGMS NIH HHS · R01 GM062287 · United States
NIGMS NIH HHS · GM 62287 · United States
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