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PMID: 20008169 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S.

Physiological versatility of the extremely thermoacidophilic archaeon Metallosphaera sedula supported by transcriptomic analysis of heterotrophic, autotrophic, and mixotrophic growth.

Applied and environmental microbiology ·Vol. 76 ·No. 3 ·2010-02-00 ·Pages 931-5

Auernik KS, Kelly RM

Abstract

Comparative transcriptomic analysis of autotrophic, heterotrophic, and mixotrophic growth of the archaeon Metallosphaera sedula (70 degrees C, pH 2.0) revealed candidates for yet-to-be-confirmed components of the 3-hydroxypropionate/4-hydroxybutyrate pathway and implicated a membrane-bound hydrogenase (Msed_0944-Msed_0946) for growth on H(2). Routes for generation of ATP and reducing equivalents were also identified.

MeSH Terms
Aerobiosis/genetics Archaeal Proteins/genetics,metabolism Autotrophic Processes Carbon Dioxide/metabolism Carbon Isotopes Gene Expression Profiling Gene Expression Regulation, Archaeal Heterotrophic Processes Hot Temperature Hydroxybutyrates/metabolism Oligonucleotide Array Sequence Analysis Substrate Specificity/genetics Sulfolobaceae/genetics,growth & development,metabolism Temperature
Chemicals
Archaeal Proteins Carbon Isotopes Hydroxybutyrates Carbon Dioxide
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Auernik Kathryne S
Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC 27695-7905, USA.
Kelly Robert M
References (24)
24 references, click to expand
  1. Malonyl-coenzyme A reductase in the modified 3-hydroxypropionate cycle for autotrophic carbon fixation in archaeal Metallosphaera and Sulfolobus spp.
    J Bacteriol. 2006 Dec;188(24):8551-9 PMID: 17041055
  2. AFM 4.0: a toolbox for DNA microarray analysis.
    Genome Biol. 2001;2(8):SOFTWARE0001 PMID: 11532221
  3. Identification of components of electron transport chains in the extremely thermoacidophilic crenarchaeon Metallosphaera sedula through iron and sulfur compound oxidation transcriptomes.
    Appl Environ Microbiol. 2008 Dec;74(24):7723-32 PMID: 18931292
  4. Inorganic carbon limitation and mixotrophic growth in Chlamydomonas from an acidic mining lake.
    Protist. 2005 Jun;156(1):63-75 PMID: 16048133
  5. Membrane-bound hydrogenase and sulfur reductase of the hyperthermophilic and acidophilic archaeon Acidianus ambivalens.
    Microbiology (Reading). 2003 Sep;149(Pt 9):2357-2371 PMID: 12949162
  6. Malonic semialdehyde reductase, succinic semialdehyde reductase, and succinyl-coenzyme A reductase from Metallosphaera sedula: enzymes of the autotrophic 3-hydroxypropionate/4-hydroxybutyrate cycle in Sulfolobales.
    J Bacteriol. 2009 Oct;191(20):6352-62 PMID: 19684143
  7. A dicarboxylate/4-hydroxybutyrate autotrophic carbon assimilation cycle in the hyperthermophilic Archaeum Ignicoccus hospitalis.
    Proc Natl Acad Sci U S A. 2008 Jun 3;105(22):7851-6 PMID: 18511565
  8. 3-hydroxypropionyl-coenzyme A dehydratase and acryloyl-coenzyme A reductase, enzymes of the autotrophic 3-hydroxypropionate/4-hydroxybutyrate cycle in the Sulfolobales.
    J Bacteriol. 2009 Jul;191(14):4572-81 PMID: 19429610
  9. Transcriptional regulation of the uptake [NiFe]hydrogenase genes in Rhodobacter capsulatus.
    Biochem Soc Trans. 2005 Feb;33(Pt 1):28-32 PMID: 15667256
  10. A 3-hydroxypropionate/4-hydroxybutyrate autotrophic carbon dioxide assimilation pathway in Archaea.
    Science. 2007 Dec 14;318(5857):1782-6 PMID: 18079405
  11. Biooxidation capacity of the extremely thermoacidophilic archaeon metallosphaera sedula under bioenergetic challenge
    Biotechnol Bioeng. 1998 Jun 20;58(6):617-24 PMID: 10099299
  12. Characterization of acetyl-CoA/propionyl-CoA carboxylase in Metallosphaera sedula. Carboxylating enzyme in the 3-hydroxypropionate cycle for autotrophic carbon fixation.
    Eur J Biochem. 2003 Feb;270(4):736-44 PMID: 12581213
  13. Chemolithoautotrophy and mixotrophy in the thiophene-2-carboxylic acid-utilizing xanthobacter tagetidis
    Arch Microbiol. 1998 Mar;169(3):249-56 PMID: 9477260
  14. Energy conservation by the H2:heterodisulfide oxidoreductase from Methanosarcina mazei Gö1: identification of two proton-translocating segments.
    J Bacteriol. 1999 Jul;181(13):4076-80 PMID: 10383977
  15. Mixotrophs combine resource use to outcompete specialists: implications for aquatic food webs.
    Proc Natl Acad Sci U S A. 2003 Oct 28;100(22):12776-81 PMID: 14569026
  16. Green plants that feed on fungi: facts and questions about mixotrophy.
    Trends Plant Sci. 2009 Feb;14(2):64-70 PMID: 19162524
  17. Bioenergetic Response of the Extreme Thermoacidophile Metallosphaera sedula to Thermal and Nutritional Stresses.
    Appl Environ Microbiol. 1995 Jun;61(6):2314-21 PMID: 16535051
  18. Classification and phylogeny of hydrogenases.
    FEMS Microbiol Rev. 2001 Aug;25(4):455-501 PMID: 11524134
  19. Respiratory gene clusters of Metallosphaera sedula - differential expression and transcriptional organization.
    Microbiology (Reading). 2005 Jan;151(Pt 1):35-43 PMID: 15632423
  20. Biological gas channels for NH3 and CO2: evidence that Rh (Rhesus) proteins are CO2 channels.
    Transfus Clin Biol. 2006 Mar-Apr;13(1-2):103-10 PMID: 16563833
  21. Hydrogenases and H(+)-reduction in primary energy conservation.
    Results Probl Cell Differ. 2008;45:223-52 PMID: 18500479
  22. The genome sequence of the metal-mobilizing, extremely thermoacidophilic archaeon Metallosphaera sedula provides insights into bioleaching-associated metabolism.
    Appl Environ Microbiol. 2008 Feb;74(3):682-92 PMID: 18083856
  23. A membrane-bound multienzyme, hydrogen-oxidizing, and sulfur-reducing complex from the hyperthermophilic bacterium Aquifex aeolicus.
    J Biol Chem. 2005 Dec 23;280(51):42004-15 PMID: 16236714
  24. An archaeal b-type cytochrome containing a nonfunctional carbonic anhydrase-like domain.
    J Biol Inorg Chem. 2002 Apr;7(4-5):483-9 PMID: 11941506
Article Info
Journal
Applied and environmental microbiology
Abbr.
Appl Environ Microbiol
ISSN
1098-5336
Published
2010-02-00
Epub
2009-00-11
Pages
931-5
Language
English
Region
United States
NLM ID
7605801
PMCID
PMC2813022
Subset
IM
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