Home LiteratureArticle Details
PMID: 2025226 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

Studies on the mechanism of hydroxymethylbilane synthase concerning the role of arginine residues in substrate binding.

The Biochemical journal ·Vol. 275 ( Pt 2) ·1991-04-15 ·Pages 447-52

Lander M, Pitt AR, Alefounder PR, Bardy D, Abell C, Battersby AR

Abstract

The role of conserved arginine residues in hydroxymethylbilane synthase was investigated by replacing these residues in the enzyme from Escherichia coli with leucine residues by using site-directed mutagenesis. The kinetic parameters for these mutant enzymes and studies on the formation of intermediate enzyme-substrate complexes indicate that several of these arginine residues are involved in binding the carboxylate side chains of the pyrromethane cofactor and the growing oligopyrrole chain.

Related Genes
MeSH Terms
Amino Acid Sequence Arginine Binding Sites Escherichia coli/enzymology,genetics Genes, Bacterial Hydroxymethylbilane Synthase/genetics,metabolism Kinetics Molecular Sequence Data Mutagenesis, Site-Directed Plasmids Recombinant Proteins/metabolism Sequence Homology, Nucleic Acid
Chemicals
Recombinant Proteins Arginine Hydroxymethylbilane Synthase
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Lander M
University Chemical Laboratory, University of Cambridge, U.K.
Pitt A R
Alefounder P R
Bardy D
Abell C
Battersby A R
References (19)
19 references, click to expand
  1. Arginyl residues: anion recognition sites in enzymes.
    Science. 1977 Mar 4;195(4281):884-6 PMID: 190679
  2. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  3. The biosynthesis of porphyrins, chlorophylls, and vitamin B12.
    Nat Prod Rep. 1985 Feb;2(1):19-47 PMID: 3895052
  4. The biosynthesis of porphyrins, chlorophylls, and vitamin B12.
    Nat Prod Rep. 1985 Dec;2(6):561-80 PMID: 3913886
  5. Molecular cloning and complete primary sequence of human erythrocyte porphobilinogen deaminase.
    Nucleic Acids Res. 1986 Aug 11;14(15):5955-68 PMID: 2875434
  6. Nucleotide sequence of the hemC locus encoding porphobilinogen deaminase of Escherichia coli K12.
    Nucleic Acids Res. 1986 Aug 11;14(15):6215-26 PMID: 3529035
  7. Purification, N-terminal amino acid sequence and properties of hydroxymethylbilane synthase (porphobilinogen deaminase) from Escherichia coli.
    Biochem J. 1986 Nov 15;240(1):273-6 PMID: 3548707
  8. Molecular cloning and sequencing of the hemD gene of Escherichia coli K-12 and preliminary data on the Uro operon.
    J Bacteriol. 1987 Sep;169(9):4257-62 PMID: 3040684
  9. Evidence for a dipyrromethane cofactor at the catalytic site of E. coli porphobilinogen deaminase.
    FEBS Lett. 1987 Dec 10;225(1-2):87-92 PMID: 3079571
  10. Alternative transcription and splicing of the human porphobilinogen deaminase gene result either in tissue-specific or in housekeeping expression.
    Proc Natl Acad Sci U S A. 1988 Jan;85(1):6-10 PMID: 3422427
  11. The biosynthesis of porphyrins, chlorophylls, and vitamin B12.
    Nat Prod Rep. 1987 Aug;4(4):441-69 PMID: 3325863
  12. Rat porphobilinogen deaminase cDNA: nucleotide sequence of the erythropoietic form.
    Nucleic Acids Res. 1988 Apr 11;16(7):3102 PMID: 3368319
  13. Evidence that the pyrromethane cofactor of hydroxymethylbilane synthase (porphobilinogen deaminase) is bound through the sulphur atom of a cysteine residue.
    Biochem J. 1988 Jun 15;252(3):909-12 PMID: 3421931
  14. The sequence of hemC, hemD and two additional E. coli genes.
    Nucleic Acids Res. 1988 Oct 25;16(20):9871 PMID: 3054815
  15. Investigation into the nature of substrate binding to the dipyrromethane cofactor of Escherichia coli porphobilinogen deaminase.
    Biochemistry. 1988 Dec 13;27(25):9020-30 PMID: 3069132
  16. The biosynthesis of porphyrins, chlorophylls, and vitamin B12.
    Nat Prod Rep. 1989 Apr;6(2):171-203 PMID: 2664584
  17. Isolation and characterisation of a cDNA clone for a chlorophyll synthesis enzyme from Euglena gracilis. The chloroplast enzyme hydroxymethylbilane synthase (porphobilinogen deaminase) is synthesised with a very long transit peptide in Euglena.
    Eur J Biochem. 1989 Sep 15;184(2):353-9 PMID: 2477247
  18. Evidence that pyridoxal phosphate modification of lysine residues (Lys-55 and Lys-59) causes inactivation of hydroxymethylbilane synthase (porphobilinogen deaminase).
    Biochem J. 1989 Aug 15;262(1):119-24 PMID: 2510713
  19. Biosynthesis of the pigments of life: formation of the macrocycle.
    Nature. 1980 May 1;285(5759):17-21 PMID: 6769048
Article Info
Journal
The Biochemical journal
Abbr.
Biochem J
ISSN
0264-6021
Published
1991-04-15
Pages
447-52
Language
English
Region
England
NLM ID
2984726R
PMCID
PMC1150073
Subset
IM
Grants
Wellcome Trust · United Kingdom
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]