Home LiteratureArticle Details
PMID: 20683473 Published · ppublish English Letter Comment

Nucleosome sequence preferences influence in vivo nucleosome organization.

Nature structural & molecular biology ·Vol. 17 ·No. 8 ·2010-08-00 ·Pages 918-20

Kaplan N, Moore I, Fondufe-Mittendorf Y, Gossett AJ, Tillo D, Field Y, Hughes TR, Lieb JD, Widom J, Segal E

Abstract

暂无摘要

MeSH Terms
Animals Base Sequence Genome, Fungal/genetics Histones/metabolism Humans Nucleosomes/genetics,metabolism Protein Binding Saccharomyces cerevisiae/genetics,metabolism
Chemicals
Histones Nucleosomes
Authors & Affiliations
10 authors, click to expand affiliations / ORCID
Kaplan Noam
Moore Irene
Fondufe-Mittendorf Yvonne
Gossett Andrea J
Tillo Desiree
Field Yair
Hughes Timothy R
Lieb Jason D
Widom Jonathan
Segal Eran
References (18)
18 references, click to expand
  1. Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization.
    Nat Genet. 2009 Apr;41(4):438-45 PMID: 19252487
  2. From DNA sequence to transcriptional behaviour: a quantitative approach.
    Nat Rev Genet. 2009 Jul;10(7):443-56 PMID: 19506578
  3. Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.
    Nature. 2007 Mar 29;446(7135):572-6 PMID: 17392789
  4. Single-molecule imaging of DNA curtains reveals intrinsic energy landscapes for nucleosome deposition.
    Nat Struct Mol Biol. 2009 Oct;16(10):1056-62 PMID: 19734899
  5. Identification and characterization of genomic nucleosome-positioning sequences.
    J Mol Biol. 1997 Apr 11;267(4):807-17 PMID: 9135113
  6. New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning.
    J Mol Biol. 1998 Feb 13;276(1):19-42 PMID: 9514715
  7. Distinct modes of regulation by chromatin encoded through nucleosome positioning signals.
    PLoS Comput Biol. 2008 Nov;4(11):e1000216 PMID: 18989395
  8. The DNA-encoded nucleosome organization of a eukaryotic genome.
    Nature. 2009 Mar 19;458(7236):362-6 PMID: 19092803
  9. Nucleosome positioning signals in genomic DNA.
    Genome Res. 2007 Aug;17(8):1170-7 PMID: 17620451
  10. Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin.
    Genome Res. 2006 Dec;16(12):1505-16 PMID: 17038564
  11. Sequence periodicities in chicken nucleosome core DNA.
    J Mol Biol. 1986 Oct 20;191(4):659-75 PMID: 3806678
  12. Nucleosomal locations of dominant DNA sequence motifs for histone-DNA interactions and nucleosome positioning.
    J Mol Biol. 2004 May 7;338(4):695-709 PMID: 15099738
  13. A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning.
    Genome Res. 2008 Jul;18(7):1051-63 PMID: 18477713
  14. High-resolution mapping of sequence-directed nucleosome positioning on genomic DNA.
    J Mol Biol. 2009 Jul 10;390(2):292-305 PMID: 19427325
  15. Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.
    EMBO J. 1995 Jun 1;14(11):2570-9 PMID: 7781610
  16. Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo.
    Nat Struct Mol Biol. 2009 Aug;16(8):847-52 PMID: 19620965
  17. Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast.
    Mol Cell. 2005 Jun 10;18(6):735-48 PMID: 15949447
  18. A genomic code for nucleosome positioning.
    Nature. 2006 Aug 17;442(7104):772-8 PMID: 16862119
Article Info
Journal
Nature structural & molecular biology
Abbr.
Nat Struct Mol Biol
ISSN
1545-9985
DOI
10.1038/nsmb0810-918
Published
2010-08-00
Pages
918-20
Language
English
Region
United States
NLM ID
101186374
PMCID
PMC2969171
Subset
IM
Grants
NCI NIH HHS · R01 CA119176 · United States
NCI NIH HHS · R01 CA119176-05 · United States
Corrections
CommentOn
PMID: 19620965
CommentIn
PMID: 20683474
CommentIn
PMID: 20683475
External Links
PubMed source DOI: 10.1038/nsmb0810-918 PMC Full Text View journal details
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]

Copyright © 2026.Genelibs Jinan Honghui Biotechnology Co., Ltd. 鲁ICP备20007159号-2