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PMID: 20709690 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Text mining meets workflow: linking U-Compare with Taverna.

Bioinformatics (Oxford, England) ·Vol. 26 ·No. 19 ·2010-10-01 ·Pages 2486-7

Kano Y, Dobson P, Nakanishi M, Tsujii J, Ananiadou S

Abstract

Text mining from the biomedical literature is of increasing importance, yet it is not easy for the bioinformatics community to create and run text mining workflows due to the lack of accessibility and interoperability of the text mining resources. The U-Compare system provides a wide range of bio text mining resources in a highly interoperable workflow environment where workflows can very easily be created, executed, evaluated and visualized without coding. We have linked U-Compare to Taverna, a generic workflow system, to expose text mining functionality to the bioinformatics community. http://u-compare.org/taverna.html, http://u-compare.org.

MeSH Terms
Computational Biology Data Mining/methods Databases, Factual User-Computer Interface Workflow
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Kano Yoshinobu
Department of Computer Science, The University of Tokyo Hongo 7-3-1, Bunkyo-ku, Tokyo, 113-0033 Japan. [email protected]
Dobson Paul
Nakanishi Mio
Tsujii Jun'ichi
Ananiadou Sophia
References (6)
6 references, click to expand
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Article Info
Journal
Bioinformatics (Oxford, England)
Abbr.
Bioinformatics
ISSN
1367-4811
Published
2010-10-01
Epub
2010-00-12
Pages
2486-7
Language
English
Region
England
NLM ID
9808944
PMCID
PMC2944208
Subset
IM
Grants
Biotechnology and Biological Sciences Research Council · BB/E004431/1 · United Kingdom
Biotechnology and Biological Sciences Research Council · BB/F006012/1 · United Kingdom
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