Home LiteratureArticle Details
PMID: 20725990 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Use of cancer-specific genomic rearrangements to quantify disease burden in plasma from patients with solid tumors.

Genes, chromosomes & cancer ·Vol. 49 ·No. 11 ·2010-11-00 ·Pages 1062-9

McBride DJ, Orpana AK, Sotiriou C, Joensuu H, Stephens PJ, Mudie LJ, Hämäläinen E, Stebbings LA, Andersson LC, Flanagan AM, Durbecq V, Ignatiadis M, Kallioniemi O, Heckman CA, Alitalo K, Edgren H, Futreal PA, Stratton MR, Campbell PJ

Abstract

Detection of recurrent somatic rearrangements routinely allows monitoring of residual disease burden in leukemias, but is not used for most solid tumors. However, next-generation sequencing now allows rapid identification of patient-specific rearrangements in solid tumors. We mapped genomic rearrangements in three cancers and showed that PCR assays for rearrangements could detect a single copy of the tumor genome in plasma without false positives. Disease status, drug responsiveness, and incipient relapse could be serially assessed. In future, this strategy could be readily established in diagnostic laboratories, with major impact on monitoring of disease status and personalizing treatment of solid tumors.

MeSH Terms
Adult Breast Neoplasms/drug therapy,genetics,pathology Female Gene Rearrangement Humans Middle Aged Osteosarcoma/drug therapy,genetics,pathology
Authors & Affiliations
19 authors, click to expand affiliations / ORCID
McBride David J
Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, UK.
Orpana Arto K
Sotiriou Christos
Joensuu Heikki
Stephens Philip J
Mudie Laura J
Hämäläinen Eija
Stebbings Lucy A
Andersson Leif C
Flanagan Adrienne M
Durbecq Virginie
Ignatiadis Michail
Kallioniemi Olli
Heckman Caroline A
Alitalo Kari
Edgren Henrik
Futreal P Andrew
Stratton Michael R
Campbell Peter J
References (28)
28 references, click to expand
  1. Chronic myeloid leukemia: molecular monitoring in clinical practice.
    Hematology Am Soc Hematol Educ Program. 2007;:376-83 PMID: 18024654
  2. Rapid clearance of fetal DNA from maternal plasma.
    Am J Hum Genet. 1999 Jan;64(1):218-24 PMID: 9915961
  3. Single-molecule detection of epidermal growth factor receptor mutations in plasma by microfluidics digital PCR in non-small cell lung cancer patients.
    Clin Cancer Res. 2009 Mar 15;15(6):2076-84 PMID: 19276259
  4. Accurate determination of relative messenger RNA levels by RT-PCR.
    Nat Biotechnol. 1999 Jul;17(7):720-2 PMID: 10409357
  5. Minimal residual disease-directed risk stratification using real-time quantitative PCR analysis of immunoglobulin and T-cell receptor gene rearrangements in the international multicenter trial AIEOP-BFM ALL 2000 for childhood acute lymphoblastic leukemia.
    Leukemia. 2008 Apr;22(4):771-82 PMID: 18239620
  6. A small-cell lung cancer genome with complex signatures of tobacco exposure.
    Nature. 2010 Jan 14;463(7278):184-90 PMID: 20016488
  7. The cancer genome.
    Nature. 2009 Apr 9;458(7239):719-24 PMID: 19360079
  8. Distinct classes of chromosomal rearrangements create oncogenic ETS gene fusions in prostate cancer.
    Nature. 2007 Aug 2;448(7153):595-9 PMID: 17671502
  9. Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis.
    PLoS One. 2009;4(5):e5548 PMID: 19440246
  10. Detection, clinical relevance and specific biological properties of disseminating tumour cells.
    Nat Rev Cancer. 2008 May;8(5):329-40 PMID: 18404148
  11. Serial assessment of human tumor burdens in mice by the analysis of circulating DNA.
    Cancer Res. 2007 Oct 1;67(19):9364-70 PMID: 17909045
  12. Complex landscapes of somatic rearrangement in human breast cancer genomes.
    Nature. 2009 Dec 24;462(7276):1005-10 PMID: 20033038
  13. Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing.
    Nat Genet. 2008 Jun;40(6):722-9 PMID: 18438408
  14. Detection and quantification of mutations in the plasma of patients with colorectal tumors.
    Proc Natl Acad Sci U S A. 2005 Nov 8;102(45):16368-73 PMID: 16258065
  15. A census of human cancer genes.
    Nat Rev Cancer. 2004 Mar;4(3):177-83 PMID: 14993899
  16. A comprehensive catalogue of somatic mutations from a human cancer genome.
    Nature. 2010 Jan 14;463(7278):191-6 PMID: 20016485
  17. Sensitive and specific measurement of minimal residual disease in acute lymphoblastic leukemia.
    J Mol Diagn. 2009 May;11(3):201-10 PMID: 19324989
  18. Incidence and prognostic value of tumour cells detected by RT-PCR in peripheral blood stem cell collections from patients with Ewing tumour.
    Br J Cancer. 2006 Nov 20;95(10):1326-33 PMID: 17088915
  19. Management of multiple myeloma and related-disorders: guidelines from the Italian Society of Hematology (SIE), Italian Society of Experimental Hematology (SIES) and Italian Group for Bone Marrow Transplantation (GITMO).
    Haematologica. 2004 Jun;89(6):717-41 PMID: 15194540
  20. Microsatellite alterations in serum DNA of head and neck cancer patients.
    Nat Med. 1996 Sep;2(9):1035-7 PMID: 8782464
  21. Recurring mutations found by sequencing an acute myeloid leukemia genome.
    N Engl J Med. 2009 Sep 10;361(11):1058-66 PMID: 19657110
  22. Differential expression of microRNAs in plasma of patients with colorectal cancer: a potential marker for colorectal cancer screening.
    Gut. 2009 Oct;58(10):1375-81 PMID: 19201770
  23. Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer.
    Nature. 2007 Aug 2;448(7153):561-6 PMID: 17625570
  24. Parameters of the human genome.
    Proc Natl Acad Sci U S A. 1991 Sep 1;88(17):7474-6 PMID: 1881886
  25. Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.
    Science. 2005 Oct 28;310(5748):644-8 PMID: 16254181
  26. Detection of mutations in EGFR in circulating lung-cancer cells.
    N Engl J Med. 2008 Jul 24;359(4):366-77 PMID: 18596266
  27. Development of personalized tumor biomarkers using massively parallel sequencing.
    Sci Transl Med. 2010 Feb 24;2(20):20ra14 PMID: 20371490
  28. Circulating mutant DNA to assess tumor dynamics.
    Nat Med. 2008 Sep;14(9):985-90 PMID: 18670422
Article Info
Journal
Genes, chromosomes & cancer
Abbr.
Genes Chromosomes Cancer
ISSN
1098-2264
Published
2010-11-00
Pages
1062-9
Language
English
Region
United States
NLM ID
9007329
PMCID
PMC3145117
Subset
IM
Grants
Wellcome Trust · 088340 · United Kingdom
Wellcome Trust · 093867 · United Kingdom
Wellcome Trust · 077012/Z/05/Z · United Kingdom
Wellcome Trust · 088340/Z/09/Z · United Kingdom
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]