Home LiteratureArticle Details
PMID: 20835238 Published · ppublish English Comparative Study Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Common variants near CAV1 and CAV2 are associated with primary open-angle glaucoma.

Nature genetics ·Vol. 42 ·No. 10 ·2010-10-00 ·Pages 906-9

Thorleifsson G, Walters GB, Hewitt AW, Masson G, Helgason A, DeWan A, Sigurdsson A, Jonasdottir A, Gudjonsson SA, Magnusson KP, Stefansson H, Lam DS, Tam PO, Gudmundsdottir GJ, Southgate L, Burdon KP, Gottfredsdottir MS, Aldred MA, Mitchell P, St Clair D, Collier DA, Tang N, Sveinsson O, Macgregor S, Martin NG, Cree AJ, Gibson J, Macleod A, Jacob A, Ennis S, Young TL, Chan JC, Karwatowski WS, Hammond CJ, Thordarson K, Zhang M, Wadelius C, Lotery AJ, Trembath RC, Pang CP, Hoh J, Craig JE, Kong A, Mackey DA, Jonasson F, Thorsteinsdottir U, Stefansson K

Abstract

We conducted a genome-wide association study for primary open-angle glaucoma (POAG) in 1,263 affected individuals (cases) and 34,877 controls from Iceland. We identified a common sequence variant at 7q31 (rs4236601[A], odds ratio (OR) = 1.36, P = 5.0 × 10⁻¹⁰). We then replicated the association in sample sets of 2,175 POAG cases and 2,064 controls from Sweden, the UK and Australia (combined OR = 1.18, P = 0.0015) and in 299 POAG cases and 580 unaffected controls from Hong Kong and Shantou, China (combined OR = 5.42, P = 0.0021). The risk variant identified here is located close to CAV1 and CAV2, both of which are expressed in the trabecular meshwork and retinal ganglion cells that are involved in the pathogenesis of POAG.

MeSH Terms
Adult Aged Aged, 80 and over Case-Control Studies Caveolin 1/genetics Caveolin 2/genetics Chromosomes, Human, Pair 7/genetics Female Genetic Predisposition to Disease Genome, Human Genome-Wide Association Study Genotype Glaucoma, Open-Angle/genetics,pathology Humans Male Middle Aged Polymorphism, Single Nucleotide/genetics
Chemicals
CAV1 protein, human CAV2 protein, human Caveolin 1 Caveolin 2
Authors & Affiliations
47 authors, click to expand affiliations / ORCID
Thorleifsson Gudmar
deCODE genetics Inc, Reykjavik, Iceland. [email protected]
Walters G Bragi
Hewitt Alex W
Masson Gisli
Helgason Agnar
DeWan Andrew
Sigurdsson Asgeir
Jonasdottir Adalbjorg
Gudjonsson Sigurjon A
Magnusson Kristinn P
Stefansson Hreinn
Lam Dennis S C
Tam Pancy O S
Gudmundsdottir Gudrun J
Southgate Laura
Burdon Kathryn P
Gottfredsdottir Maria Soffia
Aldred Micheala A
Mitchell Paul
St Clair David
Collier David A
Tang Nelson
Sveinsson Orn
Macgregor Stuart
Martin Nicholas G
Cree Angela J
Gibson Jane
Macleod Alex
Jacob Aby
Ennis Sarah
Young Terri L
Chan Juliana C N
Karwatowski Wojciech S S
Hammond Christopher J
Thordarson Kristjan
Zhang Mingzhi
Wadelius Claes
Lotery Andrew J
Trembath Richard C
Pang Chi Pui
Hoh Josephine
Craig Jamie E
Kong Augustine
Mackey David A
Jonasson Fridbert
Thorsteinsdottir Unnur
Stefansson Kari
References (31)
31 references, click to expand
  1. Genetics of gene expression and its effect on disease.
    Nature. 2008 Mar 27;452(7186):423-8 PMID: 18344981
  2. Gene expression in the trabecular meshwork and the influence of intraocular pressure.
    Prog Retin Eye Res. 2003 Jul;22(4):435-63 PMID: 12742391
  3. Genetic ablation of caveolin-1 increases neural stem cell proliferation in the subventricular zone (SVZ) of the adult mouse brain.
    Cell Cycle. 2009 Dec;8(23):3978-83 PMID: 19923909
  4. Dissecting the interaction between nitric oxide synthase (NOS) and caveolin. Functional significance of the nos caveolin binding domain in vivo.
    J Biol Chem. 1997 Oct 10;272(41):25437-40 PMID: 9325253
  5. Twins eye study in Tasmania (TEST): rationale and methodology to recruit and examine twins.
    Twin Res Hum Genet. 2009 Oct;12(5):441-54 PMID: 19803772
  6. Identification of a gene that causes primary open angle glaucoma.
    Science. 1997 Jan 31;275(5300):668-70 PMID: 9005853
  7. Common sequence variants in the LOXL1 gene confer susceptibility to exfoliation glaucoma.
    Science. 2007 Sep 7;317(5843):1397-400 PMID: 17690259
  8. Caveolae as organizers of pharmacologically relevant signal transduction molecules.
    Annu Rev Pharmacol Toxicol. 2008;48:359-91 PMID: 17914930
  9. Global data on visual impairment in the year 2002.
    Bull World Health Organ. 2004 Nov;82(11):844-51 PMID: 15640920
  10. Lack of association between LOXL1 variants and primary open-angle glaucoma in three different populations.
    Invest Ophthalmol Vis Sci. 2008 Aug;49(8):3465-8 PMID: 18421074
  11. Adult-onset primary open-angle glaucoma caused by mutations in optineurin.
    Science. 2002 Feb 8;295(5557):1077-9 PMID: 11834836
  12. The biology of caveolae: achievements and perspectives.
    Int Rev Cell Mol Biol. 2009;273:117-62 PMID: 19215904
  13. Heterozygous NTF4 mutations impairing neurotrophin-4 signaling in patients with primary open-angle glaucoma.
    Am J Hum Genet. 2009 Oct;85(4):447-56 PMID: 19765683
  14. The trabecular meshwork outflow pathways: structural and functional aspects.
    Exp Eye Res. 2009 Apr;88(4):648-55 PMID: 19239914
  15. Prevalence of open-angle glaucoma in Iceland: Reykjavik Eye Study.
    Eye (Lond). 2003 Aug;17(6):747-53 PMID: 12928689
  16. Modulation of extracellular matrix turnover in the trabecular meshwork.
    Exp Eye Res. 2009 Apr;88(4):683-8 PMID: 19385040
  17. Direct interaction of endothelial nitric-oxide synthase and caveolin-1 inhibits synthase activity.
    J Biol Chem. 1997 Jul 25;272(30):18522-5 PMID: 9228013
  18. Characterization of gene expression in human trabecular meshwork using single-pass sequencing of 1060 clones.
    Invest Ophthalmol Vis Sci. 2000 Nov;41(12):3678-93 PMID: 11053263
  19. Cell biology of caveolae and caveolin.
    Adv Drug Deliv Rev. 2001 Jul 28;49(3):223-35 PMID: 11551396
  20. Different caveolin isoforms in the retina of melanoma malignum affected human eye.
    Mol Vis. 2007 Jun 15;13:881-6 PMID: 17615539
  21. Three susceptible loci associated with primary open-angle glaucoma identified by genome-wide association study in a Japanese population.
    Proc Natl Acad Sci U S A. 2009 Aug 4;106(31):12838-42 PMID: 19625618
  22. Nitric oxide: ocular blood flow, glaucoma, and diabetic retinopathy.
    Prog Retin Eye Res. 2007 May;26(3):205-38 PMID: 17337232
  23. Detection of sharing by descent, long-range phasing and haplotype imputation.
    Nat Genet. 2008 Sep;40(9):1068-75 PMID: 19165921
  24. The genetics of primary open-angle glaucoma: a review.
    Exp Eye Res. 2009 Apr;88(4):837-44 PMID: 19061886
  25. The biology of caveolae: lessons from caveolin knockout mice and implications for human disease.
    Mol Interv. 2003 Dec;3(8):445-64 PMID: 14993453
  26. Lack of association of three primary open-angle glaucoma-susceptible loci with primary glaucomas in an Indian population.
    Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):E125-6; author reply E127 PMID: 19846772
  27. Genomic control for association studies.
    Biometrics. 1999 Dec;55(4):997-1004 PMID: 11315092
  28. A second generation human haplotype map of over 3.1 million SNPs.
    Nature. 2007 Oct 18;449(7164):851-61 PMID: 17943122
  29. Identification of a novel adult-onset primary open-angle glaucoma (POAG) gene on 5q22.1.
    Hum Mol Genet. 2005 Mar 15;14(6):725-33 PMID: 15677485
  30. Gene mapping for primary open angle glaucoma.
    Clin Biochem. 2006 Mar;39(3):249-58 PMID: 16332362
  31. Several common variants modulate heart rate, PR interval and QRS duration.
    Nat Genet. 2010 Feb;42(2):117-22 PMID: 20062063
Article Info
Journal
Nature genetics
Abbr.
Nat Genet
ISSN
1546-1718
Published
2010-10-00
Epub
2010-00-12
Pages
906-9
Language
English
Region
United States
NLM ID
9216904
PMCID
PMC3222888
Subset
IM
Grants
NEI NIH HHS · R01 EY018246 · United States
NEI NIH HHS · 1R01EY018246 · United States
NEI NIH HHS · R01 EY014685 · United States
Wellcome Trust · United Kingdom
NEI NIH HHS · R01 EY018246-03 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]