Abstract
Naturally occurring horizontal gene transfers between nonviral organisms are difficult to prove. Only with the availability of sequence data from a wide variety of organisms can a convincing case be made. In the case of putative gene transfers between prokaryotes and eukaryotes, the minimum requirements for inferring such an event include (1) sequences of the transferred gene or its product from several appropriately divergent eukaryotes and several prokaryotes, and (2) a similar set of sequences from the same (or closely related organisms) for another gene or genes. Given these criteria, we believe that a strong case can be made for Escherichia coli having acquired a second glyceraldehyde-3-phosphate dehydrogenase gene from some eukaryotic host. Ancillary observations on the general rate of change and the time of the prokaryote-eukaryote divergence support the notion.
MeSH Terms
Amino Acid Sequence
Escherichia coli/enzymology,genetics
Euryarchaeota/enzymology,genetics
Glyceraldehyde-3-Phosphate Dehydrogenases/genetics
Molecular Sequence Data
Phosphoglycerate Kinase/genetics
Phylogeny
Rhizobium/enzymology,genetics
Transfection
Chemicals
Glyceraldehyde-3-Phosphate Dehydrogenases
Phosphoglycerate Kinase
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Doolittle R F
Center for Molecular Genetics M-034, University of California, San Diego, La Jolla 92093.
Feng D F
Anderson K L
Alberro M R
References (15)
15 references, click to expand
-
Nearest neighbor procedure for relating progressively aligned amino acid sequences.
Methods Enzymol. 1990;183:659-69
PMID: 2314298
-
Sequence comparison of glyceraldehyde-3-phosphate dehydrogenases from the three urkingdoms: evolutionary implication.
Can J Microbiol. 1989 Jan;35(1):81-5
PMID: 2497945
-
Primary structure of glyceraldehyde-3-phosphate dehydrogenase deduced from the nucleotide sequence of the thermophilic archaebacterium Methanothermus fervidus.
Gene. 1988 Apr 29;64(2):189-97
PMID: 2841192
-
Wheat phosphoglycerate kinase: evidence for recombination between the genes for the chloroplastic and cytosolic enzymes.
Nucleic Acids Res. 1989 Aug 25;17(16):6569-80
PMID: 2780287
-
Identification, molecular cloning and sequence analysis of a gene cluster encoding the class II fructose 1,6-bisphosphate aldolase, 3-phosphoglycerate kinase and a putative second glyceraldehyde 3-phosphate dehydrogenase of Escherichia coli.
Mol Microbiol. 1989 Jun;3(6):723-32
PMID: 2546007
-
Nucleotide sequence of the Escherichia coli gap gene. Different evolutionary behavior of the NAD+-binding domain and of the catalytic domain of D-glyceraldehyde-3-phosphate dehydrogenase.
Eur J Biochem. 1985 Jul 1;150(1):61-6
PMID: 2990926
-
Progressive alignment and phylogenetic tree construction of protein sequences.
Methods Enzymol. 1990;183:375-87
PMID: 2314283
-
The primary structure of Cu-Zn superoxide dismutase from Photobacterium leiognathi: evidence for a separate evolution of Cu-Zn superoxide dismutase in bacteria.
Hoppe Seylers Z Physiol Chem. 1983 Jun;364(6):675-90
PMID: 6884993
-
Progressive sequence alignment as a prerequisite to correct phylogenetic trees.
J Mol Evol. 1987;25(4):351-60
PMID: 3118049
-
Protozoan myoglobin from Paramecium caudatum. Its unusual amino acid sequence.
J Mol Biol. 1989 Jul 20;208(2):355-8
PMID: 2769763
-
Prokaryotic features of a nucleus-encoded enzyme. cDNA sequences for chloroplast and cytosolic glyceraldehyde-3-phosphate dehydrogenases from mustard (Sinapis alba).
Eur J Biochem. 1986 Sep 1;159(2):323-31
PMID: 3530755
-
Glutamine synthetase II in Rhizobium: reexamination of the proposed horizontal transfer of DNA from eukaryotes to prokaryotes.
J Mol Evol. 1989 Nov;29(5):422-8
PMID: 2575672
-
Nucleotide sequence determination of the DNA region coding for Bacillus stearothermophilus glyceraldehyde-3-phosphate dehydrogenase and of the flanking DNA regions required for its expression in Escherichia coli.
Gene. 1989 Jan 30;75(1):145-55
PMID: 2656407
-
The presence of a copper/zinc superoxide dismutase in the bacterium Photobacterium leiognathi: a likely case of gene transfer from eukaryotes to prokaryotes.
Proc Natl Acad Sci U S A. 1985 Jan;82(1):149-52
PMID: 3855538
-
Primary sequence of a dimeric bacterial haemoglobin from Vitreoscilla.
Nature. 1986 Jul 31-Aug 6;322(6078):481-3
PMID: 3736670