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PMID: 21335321 Published · ppublish English Evaluation Study Journal Article Research Support, Non-U.S. Gov't

ProtTest 3: fast selection of best-fit models of protein evolution.

Bioinformatics (Oxford, England) ·Vol. 27 ·No. 8 ·2011-04-15 ·Pages 1164-5

Darriba D, Taboada GL, Doallo R, Posada D

Abstract

We have implemented a high-performance computing (HPC) version of ProtTest that can be executed in parallel in multicore desktops and clusters. This version, called ProtTest 3, includes new features and extended capabilities. ProtTest 3 source code and binaries are freely available under GNU license for download from http://darwin.uvigo.es/software/prottest3, linked to a Mercurial repository at Bitbucket (https://bitbucket.org/). [email protected] Supplementary data are available at Bioinformatics online.

MeSH Terms
Evolution, Molecular Models, Statistical Phylogeny Sequence Alignment/methods Sequence Analysis, Protein Software
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Darriba Diego
Department of Biochemistry, Genetics and Immunology, University of Vigo, 36310 Vigo, Spain.
Taboada Guillermo L
Doallo Ramón
Posada David
References (5)
5 references, click to expand
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    Syst Biol. 2004 Oct;53(5):793-808 PMID: 15545256
  2. ProtTest: selection of best-fit models of protein evolution.
    Bioinformatics. 2005 May 1;21(9):2104-5 PMID: 15647292
  3. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.
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Article Info
Journal
Bioinformatics (Oxford, England)
Abbr.
Bioinformatics
ISSN
1367-4811
DOI
10.1093/bioinformatics/btr088
Published
2011-04-15
Epub
2011-00-17
Pages
1164-5
Language
English
Region
England
NLM ID
9808944
PMCID
PMC5215816
Subset
IM
Grants
European Research Council · 203161 · International
External Links
PubMed source DOI: 10.1093/bioinformatics/btr088 PMC Full Text View journal details
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