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PMID: 21596791 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

rBioNet: A COBRA toolbox extension for reconstructing high-quality biochemical networks.

Bioinformatics (Oxford, England) ·Vol. 27 ·No. 14 ·2011-07-15 ·Pages 2009-10

Thorleifsson SG, Thiele I

Abstract

Genome-scale metabolic networks are widely used in systems biology. However, to date no freely available tool exists that ensures quality control during the reconstruction process. Here, we present a COBRA toolbox extension, rBioNet, enabling the construction of publication-level biochemical networks while enforcing necessary quality control measures. rBioNet has an intuitive user interface facilitating the reconstruction process for novices and experts. The rBioNet is freely available from http://opencobra.sourceforge.net.

MeSH Terms
Chromosome Mapping Databases as Topic Genome Metabolic Networks and Pathways Quality Control Software Systems Biology
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Thorleifsson Stefan Gretar
Center for Systems Biology, Mechanical Engineering and Computer Science, University of Iceland, Reykjavik, Iceland.
Thiele Ines
Article Info
Journal
Bioinformatics (Oxford, England)
Abbr.
Bioinformatics
ISSN
1367-4811
Published
2011-07-15
Epub
2011-00-19
Pages
2009-10
Language
English
Region
England
NLM ID
9808944
Subset
IM
Analysis Services
Analysis Services

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