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PMID: 21622662 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

TimeTree2: species divergence times on the iPhone.

Bioinformatics (Oxford, England) ·Vol. 27 ·No. 14 ·2011-07-15 ·Pages 2023-4

Kumar S, Hedges SB

Abstract

Scientists, educators and the general public often need to know times of divergence between species. But they rarely can locate that information because it is buried in the scientific literature, usually in a format that is inaccessible to text search engines. We have developed a public knowledgebase that enables data-driven access to the collection of peer-reviewed publications in molecular evolution and phylogenetics that have reported estimates of time of divergence between species. Users can query the TimeTree resource by providing two names of organisms (common or scientific) that can correspond to species or groups of species. The current TimeTree web resource (TimeTree2) contains timetrees reported from molecular clock analyses in 910 published studies and 17 341 species that span the diversity of life. TimeTree2 interprets complex and hierarchical data from these studies for each user query, which can be launched using an iPhone application, in addition to the website. Published time estimates are now readily accessible to the scientific community, K-12 and college educators, and the general public, without requiring knowledge of evolutionary nomenclature. TimeTree2 is accessible from the URL http://www.timetree.org, with an iPhone app available from iTunes (http://itunes.apple.com/us/app/timetree/id372842500?mt=8) and a YouTube tutorial (http://www.youtube.com/watch?v=CxmshZQciwo).

MeSH Terms
Cell Phone Evolution, Molecular Internet Knowledge Bases Phylogeny Software User-Computer Interface
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Kumar Sudhir
Center for Evolutionary Medicine and Informatics, Biodesign Institute, Arizona State University, Tempe, AZ 85287-5301, USA.
Hedges S Blair
References (4)
4 references, click to expand
  1. Molecular clocks: four decades of evolution.
    Nat Rev Genet. 2005 Aug;6(8):654-62 PMID: 16136655
  2. Relaxed phylogenetics and dating with confidence.
    PLoS Biol. 2006 May;4(5):e88 PMID: 16683862
  3. TimeTree: a public knowledge-base of divergence times among organisms.
    Bioinformatics. 2006 Dec 1;22(23):2971-2 PMID: 17021158
  4. Performance of relaxed-clock methods in estimating evolutionary divergence times and their credibility intervals.
    Mol Biol Evol. 2010 Jun;27(6):1289-300 PMID: 20093431
Article Info
Journal
Bioinformatics (Oxford, England)
Abbr.
Bioinformatics
ISSN
1367-4811
Published
2011-07-15
Epub
2011-00-26
Pages
2023-4
Language
English
Region
England
NLM ID
9808944
PMCID
PMC3129528
Subset
IM
Grants
NHGRI NIH HHS · R01 HG002096 · United States
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