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PMID: 2185472 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Cloning and expression of a mammalian peptide chain release factor with sequence similarity to tryptophanyl-tRNA synthetases.

Lee CC, Craigen WJ, Muzny DM, Harlow E, Caskey CT

Abstract

The termination of protein synthesis is encoded by in-frame nonsense (stop) codons. Most organisms use three nonsense codons: UGA, UAG, and UAA. In contrast to sense codons, which are decoded by specific tRNAs, nonsense codons are decoded by proteins called release factors (RFs). Here we report the cloning of a mammalian RF cDNA by the use of monoclonal antibodies specific for rabbit RF. Functional studies showed that, when expressed in Escherichia coli, the protein encoded by this cDNA has in vitro biochemical characteristics similar to those of previously characterized mammalian RFs. DNA sequencing of this eukaryotic RF cDNA revealed a remarkable sequence similarity to bacterial and mitochondrial tryptophanyl-tRNA synthetases, with the greatest similarity confined to the synthetase active site, and no obvious similarity to bacterial RFs.

MeSH Terms
Amino Acid Sequence Amino Acyl-tRNA Synthetases/genetics Animals Base Sequence Binding Sites Cell Line Cloning, Molecular DNA/genetics Escherichia coli/genetics Gene Library Liver/metabolism Molecular Sequence Data Peptide Termination Factors/genetics Rabbits Sequence Homology, Nucleic Acid Transfection Tryptophan-tRNA Ligase/genetics
Chemicals
Peptide Termination Factors peptide chain release factor, mammalian DNA Amino Acyl-tRNA Synthetases Tryptophan-tRNA Ligase
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Lee C C
Institute for Molecular Genetics, Baylor College of Medicine, Houston, TX 77030.
Craigen W J
Muzny D M
Harlow E
Caskey C T
References (34)
34 references, click to expand
  1. Three suppressor mutations which cure a mitochondrial RNA maturase deficiency occur at the same codon in the open reading frame of the nuclear NAM2 gene.
    EMBO J. 1987 Mar;6(3):713-21 PMID: 3034607
  2. The nucleotide sequence of the structural gene for Escherichia coli tryptophanyl-tRNA synthetase.
    J Biol Chem. 1982 Jun 10;257(11):6132-6 PMID: 7042706
  3. Mammalian peptide chain termination. II. Codon specificity and GTPase activity of release factor.
    Proc Natl Acad Sci U S A. 1971 Mar;68(3):619-24 PMID: 5276771
  4. Generation of cDNA probes directed by amino acid sequence: cloning of urate oxidase.
    Science. 1988 Mar 11;239(4845):1288-91 PMID: 3344434
  5. A simple and very efficient method for generating cDNA libraries.
    Gene. 1983 Nov;25(2-3):263-9 PMID: 6198242
  6. Characterization of reticulocyte release factor.
    J Biol Chem. 1977 Jul 10;252(13):4514-20 PMID: 873902
  7. Cloning and complete nucleotide sequence of the Bacillus stearothermophilus tryptophanyl tRNA synthetase gene.
    Gene. 1986;46(1):37-45 PMID: 3026925
  8. Isolation of a rat mitochondrial release factor. Accommodation of the changed genetic code for termination.
    J Biol Chem. 1987 Mar 15;262(8):3548-52 PMID: 3102489
  9. Transfer RNAs: the second genetic code.
    Nature. 1988 May 12;333(6169):117-8 PMID: 3367984
  10. Peptide chain termination with mammalian release factor.
    Proc Natl Acad Sci U S A. 1970 Sep;67(1):99-106 PMID: 4917818
  11. Structure of E. coli glutaminyl-tRNA synthetase complexed with tRNA(Gln) and ATP at 2.8 A resolution.
    Science. 1989 Dec 1;246(4934):1135-42 PMID: 2479982
  12. Gene isolation by screening lambda gt11 libraries with antibodies.
    Methods Enzymol. 1987;152:458-69 PMID: 2443804
  13. MSW, a yeast gene coding for mitochondrial tryptophanyl-tRNA synthetase.
    J Biol Chem. 1985 Dec 5;260(28):15371-7 PMID: 2999114
  14. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  15. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing.
    Gene. 1984 Jun;28(3):351-9 PMID: 6235151
  16. Methionyl-tRNA synthetase from Escherichia coli: primary structure at the binding site for the 3'-end of tRNAfMet.
    Biochemistry. 1985 Feb 26;24(5):1175-80 PMID: 3913464
  17. Human GM-CSF: molecular cloning of the complementary DNA and purification of the natural and recombinant proteins.
    Science. 1985 May 17;228(4701):810-5 PMID: 3923623
  18. Gene for Escherichia coli glycyl-tRNA synthetase has tandem subunit coding regions in the same reading frame.
    J Biol Chem. 1982 Nov 10;257(21):12503-8 PMID: 6290471
  19. High-efficiency transformation of mammalian cells by plasmid DNA.
    Mol Cell Biol. 1987 Aug;7(8):2745-52 PMID: 3670292
  20. Glutamyl-tRNA synthetase of Escherichia coli. Isolation and primary structure of the gltX gene and homology with other aminoacyl-tRNA synthetases.
    J Biol Chem. 1986 Aug 15;261(23):10610-7 PMID: 3015933
  21. The origin of the genetic code.
    J Mol Biol. 1968 Dec;38(3):367-79 PMID: 4887876
  22. A flexible multiple sequence alignment program.
    Nucleic Acids Res. 1988 Mar 11;16(5):1683-91 PMID: 3127810
  23. Lambda ZAP: a bacteriophage lambda expression vector with in vivo excision properties.
    Nucleic Acids Res. 1988 Aug 11;16(15):7583-600 PMID: 2970625
  24. Fluorescence detection in automated DNA sequence analysis.
    Nature. 1986 Jun 12-18;321(6071):674-9 PMID: 3713851
  25. Release factors differing in specificity for terminator codons.
    Proc Natl Acad Sci U S A. 1968 Oct;61(2):768-74 PMID: 4879404
  26. Release factors mediating termination of complete proteins.
    Nature. 1970 Jun 13;226(5250):1029-33 PMID: 4911223
  27. Sequence similarities among the family of aminoacyl-tRNA synthetases.
    Biochimie. 1986 Sep;68(9):1071-8 PMID: 3096385
  28. The mechanism of peptide chain termination.
    Mol Cell Biochem. 1974 Dec 20;5(3):115-26 PMID: 4614086
  29. Mammalian release factor; in vitro assay and purification.
    Methods Enzymol. 1974;30:293-303 PMID: 4604721
  30. Escherichia coli tyrosyl- and methionyl-tRNA synthetases display sequence similarity at the binding site for the 3'-end of tRNA.
    Biochemistry. 1986 Jan 14;25(1):16-21 PMID: 3513822
  31. Bacterial peptide chain release factors: conserved primary structure and possible frameshift regulation of release factor 2.
    Proc Natl Acad Sci U S A. 1985 Jun;82(11):3616-20 PMID: 3889910
  32. Dramatic events in ciliate evolution: alteration of UAA and UAG termination codons to glutamine codons due to anticodon mutations in two Tetrahymena tRNAs.
    EMBO J. 1986 Jun;5(6):1307-11 PMID: 16453685
  33. Peptide chain termination. V. The role of release factors in mRNA terminator codon recognition.
    Proc Natl Acad Sci U S A. 1969 Dec;64(4):1235-41 PMID: 4916922
  34. Influence of guanine nucleotides and elongation factors on interaction of release factors with the ribosome.
    Proc Natl Acad Sci U S A. 1973 Aug;70(8):2350-5 PMID: 4525170
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1990-05-00
Pages
3508-12
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC53930
Subset
IM
Grants
NIGMS NIH HHS · GM34438 · United States
Databases
GENBANK
M33460
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