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PMID: 21885783 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean.

Science (New York, N.Y.) ·Vol. 333 ·No. 6047 ·2011-09-02 ·Pages 1296-300

Swan BK, Martinez-Garcia M, Preston CM, Sczyrba A, Woyke T, Lamy D, Reinthaler T, Poulton NJ, Masland ED, Gomez ML, Sieracki ME, DeLong EF, Herndl GJ, Stepanauskas R

Abstract

Recent studies suggest that unidentified prokaryotes fix inorganic carbon at globally significant rates in the immense dark ocean. Using single-cell sorting and whole-genome amplification of prokaryotes from two subtropical gyres, we obtained genomic DNA from 738 cells representing most cosmopolitan lineages. Multiple cells of Deltaproteobacteria cluster SAR324, Gammaproteobacteria clusters ARCTIC96BD-19 and Agg47, and some Oceanospirillales from the lower mesopelagic contained ribulose-1,5-bisphosphate carboxylase-oxygenase and sulfur oxidation genes. These results corroborated community DNA and RNA profiling from diverse geographic regions. The SAR324 genomes also suggested C(1) metabolism and a particle-associated life-style. Microautoradiography and fluorescence in situ hybridization confirmed bicarbonate uptake and particle association of SAR324 cells. Our study suggests potential chemolithoautotrophy in several uncultured Proteobacteria lineages that are ubiquitous in the dark oxygenated ocean and provides new perspective on carbon cycling in the ocean's largest habitat.

MeSH Terms
ATP-Binding Cassette Transporters/genetics,metabolism Carbon Cycle Carbon Dioxide/metabolism Chemoautotrophic Growth Darkness Deltaproteobacteria/classification,genetics,growth & development,metabolism Gammaproteobacteria/classification,genetics,growth & development,metabolism Genes, Bacterial Genome, Bacterial Metagenome Molecular Sequence Data Oceans and Seas Oxidation-Reduction Phylogeny Ribulose-Bisphosphate Carboxylase/genetics Seawater/microbiology Sulfur/metabolism Sulfur Compounds/metabolism
Chemicals
ATP-Binding Cassette Transporters Sulfur Compounds Carbon Dioxide Sulfur Ribulose-Bisphosphate Carboxylase
Authors & Affiliations
14 authors, click to expand affiliations / ORCID
Swan Brandon K
Bigelow Laboratory for Ocean Sciences, 180 McKown Point Road, Post Office Box 475, West Boothbay Harbor, ME 04575, USA.
Martinez-Garcia Manuel
Preston Christina M
Sczyrba Alexander
Woyke Tanja
Lamy Dominique
Reinthaler Thomas
Poulton Nicole J
Masland E Dashiell P
Gomez Monica Lluesma
Sieracki Michael E
DeLong Edward F
Herndl Gerhard J
Stepanauskas Ramunas
Article Info
Journal
Science (New York, N.Y.)
Abbr.
Science
ISSN
1095-9203
Published
2011-09-02
Pages
1296-300
Language
English
Region
United States
NLM ID
0404511
Subset
IM
Grants
Austrian Science Fund FWF · I 486 · Austria
Austrian Science Fund FWF · Z 194 · Austria
Databases
GENBANK
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