Home LiteratureArticle Details
PMID: 22105466 Published · ppublish English Journal Article Review

Is there any value to hepatitis B virus genotype analysis?

Current gastroenterology reports ·Vol. 14 ·No. 1 ·2012-02-00 ·Pages 37-46

Tanwar S, Dusheiko G

Abstract

Hepatitis B may cause a varying spectrum of diseases ranging from an asymptomatic or mild anicteric acute illness, to severe or fulminant hepatitis. Similarly, the outcome of chronic hepatitis B is variable. Viral factors associated with outcome of chronic hepatitis B virus (HBV) infection include hepatitis B e antigen status, HBV DNA, genotype, and HBV variants. HBV genotypes and subgenotypes have been associated with differences in clinical and virological characteristics, indicating that they may play a role in the virus-host relationship. A total of ten hepatitis B virus genotypes have been defined with a distinct geographical distribution. Hitherto, genotypes A, B, C and D have been studied most extensively. The HBV genotype appears to influence not only the natural history of HBV related liver disease but also the response to HBV treatment. HBV genotypes are also linked with both core promoter and BCP mutations. Progression to chronic infection appears to occur more frequently following acute infection with genotypes A and D than with the other studied genotypes. Genotypes A and B appear to have higher rates of spontaneous HBeAg seroconversion. More advanced liver disease and progression to HCC is more often seen in chronic infection with genotypes C and D in contrast to genotypes A and B. More specifically, genotypes A1, C, B2-B5 and H appear to be associated with more serious complications than genotypes A2, B1 and B6. These observations suggest important pathogenic differences between HBV genotypes. Genotypes A and B have higher response rates to interferon based therapy than genotypes C and D. Knowledge of HBV genotype enables clinicians to identify those patients at increased risk of disease progression whilst aiding the selection of appropriate antiviral therapy. Genotyping and monoclonal subtyping can provide useful information for epidemiological studies. In conclusion, genotyping of chronic HBV infections can help practicing physicians identify those at risk of disease progression and determine optimal anti-viral therapy.

MeSH Terms
Genetic Variation Genotype Hepatitis B/drug therapy,transmission,virology Hepatitis B Surface Antigens/genetics Hepatitis B virus/genetics Humans Prognosis
Chemicals
Hepatitis B Surface Antigens
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Tanwar Sudeep
Centre for Hepatology, University College London Royal Free Campus, Rowland Hill Street Hampstead, London, NW3 2PF, UK. [email protected]
Dusheiko Geoffrey
References (103)
103 references, click to expand
  1. Hepatitis B virus genotypes and spontaneous hepatitis B e antigen seroconversion in Taiwanese hepatitis B carriers.
    J Med Virol. 2004 Mar;72(3):363-9 PMID: 14748059
  2. Pegylated interferon alfa-2b alone or in combination with lamivudine for HBeAg-positive chronic hepatitis B: a randomised trial.
    Lancet. 2005 Jan 8-14;365(9454):123-9 PMID: 15639293
  3. Comparison of the amino acid sequences of nine different serotypes of hepatitis B surface antigen and genomic classification of the corresponding hepatitis B virus strains.
    J Gen Virol. 1992 May;73 ( Pt 5):1201-8 PMID: 1588323
  4. Epidemiologic and virologic characteristics of hepatitis B virus genotype B having the recombination with genotype C.
    Gastroenterology. 2003 Apr;124(4):925-32 PMID: 12671889
  5. Associations between hepatitis B virus mutations and the risk of hepatocellular carcinoma: a meta-analysis.
    J Natl Cancer Inst. 2009 Aug 5;101(15):1066-82 PMID: 19574418
  6. Characterization of hepatitis virus B isolated from a multi-drug refractory patient.
    Virus Res. 2011 Jan;155(1):254-8 PMID: 20970466
  7. Hepatitis B virus genotypes and hepatocellular carcinoma in Thailand.
    World J Gastroenterol. 2005 Apr 21;11(15):2238-43 PMID: 15818732
  8. Influence of hepatitis B virus genotype on the long-term outcome of chronic hepatitis B in western patients.
    Gastroenterology. 2002 Dec;123(6):1848-56 PMID: 12454842
  9. HBV genotype C is independently associated with cirrhosis in community-based population.
    World J Gastroenterol. 2010 Jan 21;16(3):379-83 PMID: 20082486
  10. Pathogenesis of chronic liver disease in patients with chronic hepatitis B virus infection without serum HBeAg.
    Dig Dis Sci. 1996 Dec;41(12):2447-52 PMID: 9011456
  11. Nomenclature for antiviral-resistant human hepatitis B virus mutations in the polymerase region.
    Hepatology. 2001 Mar;33(3):751-7 PMID: 11230757
  12. Geographical and genetic diversity of the human hepatitis B virus.
    Hepatol Res. 2010 Jan;40(1):14-30 PMID: 20156297
  13. A case-control study for clinical and molecular biological differences between hepatitis B viruses of genotypes B and C. Japan HBV Genotype Research Group.
    Hepatology. 2001 Jan;33(1):218-23 PMID: 11124839
  14. Hepatitis B virus genotype B has an earlier emergence of lamivudine resistance than genotype C.
    Antivir Ther. 2009;14(8):1157-63 PMID: 20032545
  15. Relationships between serotypes and genotypes of hepatitis B virus: genetic classification of HBV by use of surface genes.
    Virus Res. 1995 Nov;39(1):25-34 PMID: 8607280
  16. Four-year study of lamivudine and adefovir combination therapy in lamivudine-resistant hepatitis B patients: influence of hepatitis B virus genotype and resistance mutation pattern.
    J Viral Hepat. 2011 Mar;18(3):206-15 PMID: 20367795
  17. Treatment with Peg-interferon alpha-2b for HBeAg-positive chronic hepatitis B: HBsAg loss is associated with HBV genotype.
    Am J Gastroenterol. 2006 Feb;101(2):297-303 PMID: 16454834
  18. Chronic hepatitis B: update 2009.
    Hepatology. 2009 Sep;50(3):661-2 PMID: 19714720
  19. Different hepatitis B virus genotypes are associated with different mutations in the core promoter and precore regions during hepatitis B e antigen seroconversion.
    Hepatology. 1999 Mar;29(3):976-84 PMID: 10051506
  20. Hepatitis B virus genotype C isolates with wild-type core promoter sequence replicate less efficiently than genotype B isolates but possess higher virion secretion capacity.
    J Virol. 2011 Oct;85(19):10167-77 PMID: 21775451
  21. Hepatitis B virus genotypes and HBsAg subtypes in refugees and injection drug users in the United States determined by LiPA and monoclonal EIA.
    J Med Virol. 2001 Jul;64(3):305-11 PMID: 11424119
  22. Major role of hepatitis B genotypes in liver fibrosis during coinfection with HIV.
    AIDS. 2006 Feb 14;20(3):419-27 PMID: 16439876
  23. Hepatitis B virus gene function: the precore region targets the core antigen to cellular membranes and causes the secretion of the e antigen.
    Proc Natl Acad Sci U S A. 1986 Mar;83(6):1578-82 PMID: 3006057
  24. A "NEW" ANTIGEN IN LEUKEMIA SERA.
    JAMA. 1965 Feb 15;191:541-6 PMID: 14239025
  25. Response to interferon alfa is hepatitis B virus genotype dependent: genotype A is more sensitive to interferon than genotype D.
    Gut. 2005 Jul;54(7):1009-13 PMID: 15951551
  26. T3098C and T53C mutations of HBV genotype C is associated with HBV infection progress.
    Biomed Environ Sci. 2009 Dec;22(6):511-7 PMID: 20337225
  27. Genotyping the hepatitis B virus with a fragment of the HBV DNA polymerase gene in Shenyang, China.
    Virol J. 2011 Jun 22;8:315 PMID: 21693069
  28. Slave trade and hepatitis B virus genotypes and subgenotypes in Haiti and Africa.
    Emerg Infect Dis. 2009 Aug;15(8):1222-8 PMID: 19751583
  29. The influence of hepatitis B virus genotype and subgenotype on the natural history of chronic hepatitis B.
    Hepatol Int. 2009 Jun;3(2):334-42 PMID: 19669359
  30. Hepatitis B genotypes and the response to interferon therapy.
    J Hepatol. 2000 Dec;33(6):998-1002 PMID: 11131465
  31. Hepatitis B virus genotypes in Alaska Native people with hepatocellular carcinoma: preponderance of genotype F.
    J Infect Dis. 2007 Jan 1;195(1):5-11 PMID: 17152003
  32. New hepatitis B surface antigen subtypes inside the ad category.
    Vox Sang. 1978;35(5):304-8 PMID: 80881
  33. Clearance of hepatitis B e antigen in patients with chronic hepatitis B and genotypes A, B, C, D, and F.
    Gastroenterology. 2007 Nov;133(5):1452-7 PMID: 17920063
  34. Nucleotide changes related to hepatocellular carcinoma in the enhancer 1/x-promoter of hepatitis B virus subgenotype C2 in cirrhotic patients.
    Cancer Sci. 2010 Aug;101(8):1905-12 PMID: 20550526
  35. Response to antiviral treatment in patients infected with hepatitis B virus genotypes E-H.
    J Med Virol. 2009 Oct;81(10):1716-20 PMID: 19697400
  36. A comprehensive immunization strategy to eliminate transmission of hepatitis B virus infection in the United States: recommendations of the Advisory Committee on Immunization Practices (ACIP) Part II: immunization of adults.
    MMWR Recomm Rep. 2006 Dec 8;55(RR-16):1-33; quiz CE1-4 PMID: 17159833
  37. Significance of hepatitis B genotype in acute exacerbation, HBeAg seroconversion, cirrhosis-related complications, and hepatocellular carcinoma.
    Hepatology. 2003 Mar;37(3):562-7 PMID: 12601354
  38. A comprehensive immunization strategy to eliminate transmission of hepatitis B virus infection in the United States: recommendations of the Advisory Committee on Immunization Practices (ACIP) part 1: immunization of infants, children, and adolescents.
    MMWR Recomm Rep. 2005 Dec 23;54(RR-16):1-31 PMID: 16371945
  39. Clinical significance of genotypes and precore/basal core promoter mutations in HBV related chronic liver disease patients in North India.
    Dig Dis Sci. 2010 Mar;55(3):794-802 PMID: 20043209
  40. Hepatitis B virus: significance of genotypes.
    J Viral Hepat. 2005 Mar;12(2):111-24 PMID: 15720525
  41. Prediction of the response to peg-interferon-alfa in patients with HBeAg positive chronic hepatitis B using decline of HBV DNA during treatment.
    J Med Virol. 2010 Jul;82(7):1135-42 PMID: 20513075
  42. Increased hepatocarcinogenic potential of hepatitis B virus genotype A in Bantu-speaking sub-saharan Africans.
    J Med Virol. 2005 Apr;75(4):513-21 PMID: 15714494
  43. Hepatitis B genotype C correlated with poor surgical outcomes for hepatocellular carcinoma.
    J Am Coll Surg. 2010 Nov;211(5):580-6 PMID: 20851644
  44. Hepatitis B virus genotyping: current methods and clinical implications.
    Int J Infect Dis. 2010 Nov;14(11):e941-53 PMID: 20674432
  45. Full-genome sequence analyses of hepatitis B virus (HBV) strains recovered from chimpanzees infected in the wild: implications for an origin of HBV.
    Virology. 2000 Feb 1;267(1):58-64 PMID: 10648183
  46. Deletions and recombinations in the core region of hepatitis B virus genotype E strains from asymptomatic blood donors in Guinea, west Africa.
    J Gen Virol. 2009 Oct;90(Pt 10):2442-2451 PMID: 19535503
  47. Kinetics of hepatitis B surface antigen decline during 3 years of telbivudine treatment in hepatitis B e antigen-positive patients.
    Hepatology. 2010 Nov;52(5):1611-20 PMID: 20931556
  48. Peginterferon alpha-2a (40 kDa): an advance in the treatment of hepatitis B e antigen-positive chronic hepatitis B.
    J Viral Hepat. 2003 Jul;10(4):298-305 PMID: 12823597
  49. Core promoter mutations and genotypes in relation to viral replication and liver damage in East Asian hepatitis B virus carriers.
    J Infect Dis. 1999 Apr;179(4):775-82 PMID: 10068571
  50. HBsAg seroclearance in chronic hepatitis B in the Chinese: virological, histological, and clinical aspects.
    Hepatology. 2004 Jun;39(6):1694-701 PMID: 15185311
  51. Nomograms for risk of hepatocellular carcinoma in patients with chronic hepatitis B virus infection.
    J Clin Oncol. 2010 May 10;28(14):2437-44 PMID: 20368541
  52. Hepatitis B virus genotype A rarely circulates as an HBe-minus mutant: possible contribution of a single nucleotide in the precore region.
    J Virol. 1993 Sep;67(9):5402-10 PMID: 8350403
  53. Complete sequencing of a gibbon hepatitis B virus genome reveals a unique genotype distantly related to the chimpanzee hepatitis B virus.
    Virology. 1996 Apr 1;218(1):214-23 PMID: 8615024
  54. Main mutations in the hepatitis B virus basic core promoter (A1762T/G1764A) before HBeAg loss are markers that identify patients who will require long-term treatment.
    Aliment Pharmacol Ther. 2010 Jul;32(1):97-104 PMID: 20374224
  55. Hepatitis B virus genotype B results in better immediate, late and sustained responses to peginterferon-alfa in hepatitis-B-e-antigen-positive patients.
    J Gastroenterol Hepatol. 2011 Mar;26(3):461-8 PMID: 21332543
  56. Natural history of chronic HBV infection: a cohort study with up to 12 years follow-up in North Greece (part of the Interreg I-II/EC-project).
    J Med Virol. 2005 Oct;77(2):173-9 PMID: 16121378
  57. [Association between HBV genotype and chronic/severe liver disease with HBV infection in Chinese patients].
    Zhonghua Shi Yan He Lin Chuang Bing Du Xue Za Zhi. 2010 Jun;24(3):178-80 PMID: 21186519
  58. Mutations in the basic core promotor and the precore region of hepatitis B virus and their selection in children with fulminant and chronic hepatitis B.
    Hepatology. 1999 Apr;29(4):1252-8 PMID: 10094972
  59. Sustained response of hepatitis B e antigen-negative patients 3 years after treatment with peginterferon alpha-2a.
    Gastroenterology. 2009 Jun;136(7):2169-2179.e1-4 PMID: 19303414
  60. Associations between hepatitis B virus genotype and mutants and the risk of hepatocellular carcinoma.
    J Natl Cancer Inst. 2008 Aug 20;100(16):1134-43 PMID: 18695135
  61. Hepatitis B virus genotype G: prevalence and impact in patients co-infected with human immunodeficiency virus.
    J Med Virol. 2011 Sep;83(9):1551-8 PMID: 21739445
  62. Natural history of chronic hepatitis B: special emphasis on disease progression and prognostic factors.
    J Hepatol. 2008 Feb;48(2):335-52 PMID: 18096267
  63. Prevalence and clinical implications of hepatitis B virus genotypes in southern Taiwan.
    Scand J Gastroenterol. 2003 Jan;38(1):95-101 PMID: 12608471
  64. Natural history of chronic hepatitis B in Euro-Mediterranean and African countries.
    J Hepatol. 2011 Jul;55(1):183-91 PMID: 21238520
  65. Influence of hepatitis B virus (HBV) genotype on the clinical course of disease in patients coinfected with HBV and hepatitis delta virus.
    J Infect Dis. 2009 Jun 1;199(11):1608-11 PMID: 19388852
  66. An outbreak of hepatitis B with high mortality in India: association with precore, basal core promoter mutants and improperly sterilized syringes.
    J Viral Hepat. 2011 Apr;18(4):e20-8 PMID: 21108697
  67. Influence of genotypes and precore mutations on fulminant or chronic outcome of acute hepatitis B virus infection.
    Hepatology. 2006 Aug;44(2):326-34 PMID: 16871568
  68. Mutation preventing formation of hepatitis B e antigen in patients with chronic hepatitis B infection.
    Lancet. 1989 Sep 9;2(8663):588-91 PMID: 2570285
  69. EASL Clinical Practice Guidelines: management of chronic hepatitis B.
    J Hepatol. 2009 Feb;50(2):227-42 PMID: 19054588
  70. Global control of hepatitis B virus infection.
    Lancet Infect Dis. 2002 Jul;2(7):395-403 PMID: 12127351
  71. Hepatocellular carcinoma in African Blacks: Recent progress in etiology and pathogenesis.
    World J Hepatol. 2010 Feb 27;2(2):65-73 PMID: 21160975
  72. Identification of hepatitis B virus indigenous to chimpanzees.
    Proc Natl Acad Sci U S A. 2000 Feb 15;97(4):1661-4 PMID: 10677515
  73. Mutation of nucleotide 1,762 in the core promoter region during hepatitis B e seroconversion and its relation to liver damage in hepatitis B e antigen carriers.
    J Med Virol. 1998 Jul;55(3):185-90 PMID: 9624604
  74. Detection of hepatitis B virus infection in wild-born chimpanzees (Pan troglodytes verus): phylogenetic relationships with human and other primate genotypes.
    J Virol. 2000 May;74(9):4253-7 PMID: 10756039
  75. Hepatitis B: the virus and disease.
    Hepatology. 2009 May;49(5 Suppl):S13-21 PMID: 19399811
  76. Independent risk factors and predictive score for the development of hepatocellular carcinoma in chronic hepatitis B.
    J Hepatol. 2009 Jan;50(1):80-8 PMID: 18977053
  77. Host-independent evolution and a genetic classification of the hepadnavirus family based on nucleotide sequences.
    Proc Natl Acad Sci U S A. 1989 Sep;86(18):7059-62 PMID: 2780562
  78. Distribution of hepatitis B virus (HBV) genotypes among HBV carriers in the Cote d'Ivoire: complete genome sequence and phylogenetic relatedness of HBV genotype E.
    J Med Virol. 2003 Apr;69(4):459-65 PMID: 12601751
  79. Distinctive sequence characteristics of subgenotype A1 isolates of hepatitis B virus from South Africa.
    J Gen Virol. 2004 May;85(Pt 5):1211-1220 PMID: 15105537
  80. New complex recombinant genotype of hepatitis B virus identified in Vietnam.
    J Virol. 2008 Jun;82(11):5657-63 PMID: 18353958
  81. Should treatment of hepatitis B depend on hepatitis B virus genotypes? A hypothesis generated from an explorative analysis of published evidence.
    Antivir Ther. 2008;13(2):211-20 PMID: 18505172
  82. Hepatitis B virus genotype and basal core promoter/precore mutations are associated with hepatitis B-related acute-on-chronic liver failure without pre-existing liver cirrhosis.
    J Viral Hepat. 2010 Dec;17(12):887-95 PMID: 20070500
  83. Clinical scoring system to predict hepatocellular carcinoma in chronic hepatitis B carriers.
    J Clin Oncol. 2010 Apr 1;28(10):1660-5 PMID: 20194845
  84. Genotype H: a new Amerindian genotype of hepatitis B virus revealed in Central America.
    J Gen Virol. 2002 Aug;83(Pt 8):2059-2073 PMID: 12124470
  85. Outbreak of infections by hepatitis B virus genotype A and transmission of genetic drug resistance in patients coinfected with HIV-1 in Japan.
    J Clin Microbiol. 2011 Mar;49(3):1017-24 PMID: 21248087
  86. Hepatitis B e antigen in sera from individuals infected with hepatitis B virus of genotype G.
    Hepatology. 2002 Apr;35(4):922-9 PMID: 11915040
  87. High prevalence of hepatitis B virus genotype E in Northern Madagascar indicates a West-African lineage.
    J Med Virol. 2010 Sep;82(9):1515-26 PMID: 20648605
  88. Hepatitis B virus genotype B is associated with earlier HBeAg seroconversion compared with hepatitis B virus genotype C.
    Gastroenterology. 2002 Jun;122(7):1756-62 PMID: 12055581
  89. A new genotype of hepatitis B virus: complete genome and phylogenetic relatedness.
    J Gen Virol. 2000 Jan;81(Pt 1):67-74 PMID: 10640543
  90. Hepatitis B virus genomic sequence in the circulation of hepatocellular carcinoma patients: comparative analysis of 40 full-length isolates.
    Arch Virol. 1998;143(12):2313-26 PMID: 9930189
  91. Hepatitis B genotypes correlate with clinical outcomes in patients with chronic hepatitis B.
    Gastroenterology. 2000 Mar;118(3):554-9 PMID: 10702206
  92. Prevention of perinatally transmitted hepatitis B virus infections with hepatitis B immune globulin and hepatitis B vaccine.
    Lancet. 1983 Nov 12;2(8359):1099-102 PMID: 6138642
  93. Pegylated interferons for chronic hepatitis B.
    Antiviral Res. 2003 Oct;60(2):87-9 PMID: 14638403
  94. High viral load and hepatitis B virus subgenotype ce are associated with increased risk of hepatocellular carcinoma.
    J Clin Oncol. 2008 Jan 10;26(2):177-82 PMID: 18182659
  95. Typing hepatitis B virus by homology in nucleotide sequence: comparison of surface antigen subtypes.
    J Gen Virol. 1988 Oct;69 ( Pt 10):2575-83 PMID: 3171552
  96. A genetic variant of hepatitis B virus divergent from known human and ape genotypes isolated from a Japanese patient and provisionally assigned to new genotype J.
    J Virol. 2009 Oct;83(20):10538-47 PMID: 19640977
  97. Genotype C hepatitis B virus infection is associated with a higher risk of reactivation of hepatitis B and progression to cirrhosis than genotype B: a longitudinal study of hepatitis B e antigen-positive patients with normal aminotransferase levels at baseline.
    J Hepatol. 2005 Sep;43(3):411-7 PMID: 16006001
  98. Hepatitis B virus: the genotype E puzzle.
    Rev Med Virol. 2009 Jul;19(4):231-40 PMID: 19475565
  99. Secular trend of the viral genotype distribution in children with chronic hepatitis B virus infection after universal infant immunization.
    Hepatology. 2011 Feb;53(2):429-36 PMID: 21274864
  100. Association between Hepatitis B Virus X Gene Mutations and Clinical Status in Patients with Chronic Hepatitis B Infection.
    Gut Liver. 2011 Mar;5(1):70-6 PMID: 21461076
  101. HBV genotype B is associated with better response to interferon therapy in HBeAg(+) chronic hepatitis than genotype C.
    Hepatology. 2002 Dec;36(6):1425-30 PMID: 12447868
  102. Impact of hepatitis B virus (HBV) x gene mutations on hepatocellular carcinoma development in chronic HBV infection.
    Clin Vaccine Immunol. 2011 Jun;18(6):914-21 PMID: 21490166
  103. Asian-Pacific consensus statement on the management of chronic hepatitis B: a 2008 update.
    Hepatol Int. 2008 Sep;2(3):263-83 PMID: 19669255
Article Info
Journal
Current gastroenterology reports
Abbr.
Curr Gastroenterol Rep
ISSN
1534-312X
Published
2012-02-00
Pages
37-46
Language
English
Region
United States
NLM ID
100888896
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]