Home LiteratureArticle Details
PMID: 22174245 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Detecting novel associations in large data sets.

Science (New York, N.Y.) ·Vol. 334 ·No. 6062 ·2011-12-16 ·Pages 1518-24

Reshef DN, Reshef YA, Finucane HK, Grossman SR, McVean G, Turnbaugh PJ, Lander ES, Mitzenmacher M, Sabeti PC

Abstract

Identifying interesting relationships between pairs of variables in large data sets is increasingly important. Here, we present a measure of dependence for two-variable relationships: the maximal information coefficient (MIC). MIC captures a wide range of associations both functional and not, and for functional relationships provides a score that roughly equals the coefficient of determination (R(2)) of the data relative to the regression function. MIC belongs to a larger class of maximal information-based nonparametric exploration (MINE) statistics for identifying and classifying relationships. We apply MIC and MINE to data sets in global health, gene expression, major-league baseball, and the human gut microbiota and identify known and novel relationships.

MeSH Terms
Algorithms Animals Baseball/statistics & numerical data Data Interpretation, Statistical Female Gene Expression Genes, Fungal Genomics/methods Humans Intestines/microbiology Male Metagenome Mice Obesity Saccharomyces cerevisiae/genetics
Authors & Affiliations
9 authors, click to expand affiliations / ORCID
Reshef David N
Department of Computer Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. [email protected]
Reshef Yakir A
Finucane Hilary K
Grossman Sharon R
McVean Gilean
Turnbaugh Peter J
Lander Eric S
Mitzenmacher Michael
Sabeti Pardis C
References (15)
15 references, click to expand
  1. Robust detection of periodic time series measured from biological systems.
    BMC Bioinformatics. 2005 May 13;6:117 PMID: 15892890
  2. Maternal education and child health: is there a strong causal relationship?
    Demography. 1998 Feb;35(1):71-81 PMID: 9512911
  3. Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes.
    Science. 2005 Nov 18;310(5751):1152-8 PMID: 16254148
  4. The human microbiome project.
    Nature. 2007 Oct 18;449(7164):804-10 PMID: 17943116
  5. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.
    Mol Biol Cell. 1998 Dec;9(12):3273-97 PMID: 9843569
  6. Dealing with data. Challenges and opportunities. Introduction.
    Science. 2011 Feb 11;331(6018):692-3 PMID: 21311002
  7. The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice.
    Sci Transl Med. 2009 Nov 11;1(6):6ra14 PMID: 20368178
  8. How does multiple testing correction work?
    Nat Biotechnol. 2009 Dec;27(12):1135-7 PMID: 20010596
  9. Estimating mutual information.
    Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Jun;69(6 Pt 2):066138 PMID: 15244698
  10. Estimation of mutual information using kernel density estimators.
    Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1995 Sep;52(3):2318-2321 PMID: 9963673
  11. The mutual information: detecting and evaluating dependencies between variables.
    Bioinformatics. 2002;18 Suppl 2:S231-40 PMID: 12386007
  12. False discovery or missed discovery?
    Heredity (Edinb). 2003 Dec;91(6):537-8 PMID: 14571259
  13. Evolution of mammals and their gut microbes.
    Science. 2008 Jun 20;320(5883):1647-51 PMID: 18497261
  14. Human resources for health: overcoming the crisis.
    Lancet. 2004 Nov 27-Dec 3;364(9449):1984-90 PMID: 15567015
  15. Influence of life stress on depression: moderation by a polymorphism in the 5-HTT gene.
    Science. 2003 Jul 18;301(5631):386-9 PMID: 12869766
Article Info
Journal
Science (New York, N.Y.)
Abbr.
Science
ISSN
1095-9203
Published
2011-12-16
Pages
1518-24
Language
English
Region
United States
NLM ID
0404511
PMCID
PMC3325791
Subset
IM
Grants
NIGMS NIH HHS · T32 GM007753 · United States
NIGMS NIH HHS · U54 GM088558-03 · United States
NIGMS NIH HHS · U54GM088558 · United States
NIGMS NIH HHS · P50 GM068763-09 · United States
NIGMS NIH HHS · P50 GM068763 · United States
NIGMS NIH HHS · U54 GM088558 · United States
Wellcome Trust · 090532 · United Kingdom
Corrections
CommentIn
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]