Home LiteratureArticle Details
PMID: 22245832 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Review

A new branch on the tree: next-generation sequencing in the study of cancer evolution.

Seminars in cell & developmental biology ·Vol. 23 ·No. 2 ·2012-04-00 ·Pages 237-42

Brosnan JA, Iacobuzio-Donahue CA

Abstract

Cancer is a disease caused by the accumulation of genetic alterations in association with successive waves of clonal expansion. Mapping of the human genome sequence, in conjunction with technical advances in the ability to sequence entire genomes, have provided new insight into the mutational spectra and genetic events associated with clonal evolution of cancer. Moving forward, a clearer understanding of those alterations that undergo positive and negative selection throughout carcinogenesis and leading to metastatic dissemination would provide a boon not only to our understanding of cancer evolution, but to the development of potential targets for therapeutic intervention as well.

MeSH Terms
Abnormal Karyotype Cell Line, Tumor Chromosome Mapping/methods Comparative Genomic Hybridization Genes, Neoplasm Genetic Heterogeneity Genome, Human Genomic Instability Humans Mutation Neoplasm Metastasis/genetics Neoplasms/genetics Selection, Genetic Sequence Analysis, DNA/methods
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Brosnan Jacqueline A
Graduate Program in Pathobiology, The Sol Goldman Pancreatic Cancer Research Center, Johns Hopkins Medical Institutions, Baltimore, MD, USA.
Iacobuzio-Donahue Christine A
References (55)
55 references, click to expand
  1. Evolution of neoplastic cell lineages in Barrett oesophagus.
    Nat Genet. 1999 May;22(1):106-9 PMID: 10319873
  2. Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing.
    Nat Genet. 2008 Jun;40(6):722-9 PMID: 18438408
  3. Allelic loss and the progression of breast cancer.
    Cancer Res. 1995 Nov 15;55(22):5180-3 PMID: 7585569
  4. A genetic model for colorectal tumorigenesis.
    Cell. 1990 Jun 1;61(5):759-67 PMID: 2188735
  5. Increasing metastatic potential is associated with increasing genetic instability of clones isolated from murine neoplasms.
    Proc Natl Acad Sci U S A. 1981 Nov;78(11):6949-52 PMID: 6947269
  6. Clonal origin of lymph node metastases in bladder carcinoma.
    Cancer. 2005 Nov 1;104(9):1901-10 PMID: 16196038
  7. Initial genome sequencing and analysis of multiple myeloma.
    Nature. 2011 Mar 24;471(7339):467-72 PMID: 21430775
  8. The genetic landscape of the childhood cancer medulloblastoma.
    Science. 2011 Jan 28;331(6016):435-9 PMID: 21163964
  9. Evolution of intratumoral genetic heterogeneity during colorectal cancer progression.
    Carcinogenesis. 2005 May;26(5):916-22 PMID: 15731168
  10. The patterns and dynamics of genomic instability in metastatic pancreatic cancer.
    Nature. 2010 Oct 28;467(7319):1109-13 PMID: 20981101
  11. Next-generation sequencing of the TET2 gene in 355 MDS and CMML patients reveals low-abundance mutant clones with early origins, but indicates no definite prognostic value.
    Blood. 2010 Nov 11;116(19):3923-32 PMID: 20693430
  12. Cancer statistics, 2011: the impact of eliminating socioeconomic and racial disparities on premature cancer deaths.
    CA Cancer J Clin. 2011 Jul-Aug;61(4):212-36 PMID: 21685461
  13. The mutation spectrum revealed by paired genome sequences from a lung cancer patient.
    Nature. 2010 May 27;465(7297):473-7 PMID: 20505728
  14. High-resolution mapping of copy-number alterations with massively parallel sequencing.
    Nat Methods. 2009 Jan;6(1):99-103 PMID: 19043412
  15. Metastasis: quantitative analysis of distribution and fate of tumor emboli labeled with 125 I-5-iodo-2'-deoxyuridine.
    J Natl Cancer Inst. 1970 Oct;45(4):773-82 PMID: 5513503
  16. Genetic instability and darwinian selection in tumours.
    Trends Cell Biol. 1999 Dec;9(12):M57-60 PMID: 10611684
  17. DAXX/ATRX, MEN1, and mTOR pathway genes are frequently altered in pancreatic neuroendocrine tumors.
    Science. 2011 Mar 4;331(6021):1199-203 PMID: 21252315
  18. Comparison of losses of heterozygosity and replication errors in primary colorectal carcinomas and corresponding liver metastases.
    J Pathol. 1999 Jul;188(3):258-62 PMID: 10419592
  19. Metastatic heterogeneity of cells from an ultraviolet light-induced murine fibrosarcoma of recent origin.
    Cancer Res. 1978 Sep;38(9):2962-7 PMID: 679204
  20. Genetic pattern of prostate cancer progression.
    Int J Cancer. 1999 Apr 12;81(2):219-24 PMID: 10188722
  21. An integrated genomic analysis of human glioblastoma multiforme.
    Science. 2008 Sep 26;321(5897):1807-12 PMID: 18772396
  22. Genetic changes and clonality relationship between primary colorectal cancers and their pulmonary metastases--an analysis by comparative genomic hybridization.
    Genes Chromosomes Cancer. 2005 May;43(1):25-36 PMID: 15723340
  23. Evolution of tumor cell heterogeneity during progressive growth of individual lung metastases.
    Proc Natl Acad Sci U S A. 1982 Nov;79(21):6574-8 PMID: 6959137
  24. Exome sequencing of head and neck squamous cell carcinoma reveals inactivating mutations in NOTCH1.
    Science. 2011 Aug 26;333(6046):1154-7 PMID: 21798897
  25. Genome remodelling in a basal-like breast cancer metastasis and xenograft.
    Nature. 2010 Apr 15;464(7291):999-1005 PMID: 20393555
  26. Evidence for the clonal origin of spontaneous metastases.
    Science. 1982 Jul 23;217(4557):361-3 PMID: 6953592
  27. Subclonal phylogenetic structures in cancer revealed by ultra-deep sequencing.
    Proc Natl Acad Sci U S A. 2008 Sep 2;105(35):13081-6 PMID: 18723673
  28. Second generation sequencing of the mesothelioma tumor genome.
    PLoS One. 2010 May 13;5(5):e10612 PMID: 20485525
  29. Massive genomic rearrangement acquired in a single catastrophic event during cancer development.
    Cell. 2011 Jan 7;144(1):27-40 PMID: 21215367
  30. Chromosomal alterations in lung metastases of colorectal carcinomas: associations with tissue specific tumor dissemination.
    Clin Exp Metastasis. 2005;22(7):533-8 PMID: 16475023
  31. Genetic evolution in the metastatic progression of human pancreatic cancer studied by CGH.
    Lab Invest. 2001 Dec;81(12):1703-7 PMID: 11742040
  32. Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors.
    Science. 1992 Oct 30;258(5083):818-21 PMID: 1359641
  33. Allelotype analysis of flow-sorted breast cancer cells demonstrates genetically related diploid and aneuploid subpopulations in primary tumors and lymph node metastases.
    Genes Chromosomes Cancer. 2000 Jun;28(2):173-83 PMID: 10825002
  34. Metastasis results from preexisting variant cells within a malignant tumor.
    Science. 1977 Aug 26;197(4306):893-5 PMID: 887927
  35. Frequent mutations of chromatin remodeling gene ARID1A in ovarian clear cell carcinoma.
    Science. 2010 Oct 8;330(6001):228-31 PMID: 20826764
  36. From latent disseminated cells to overt metastasis: genetic analysis of systemic breast cancer progression.
    Proc Natl Acad Sci U S A. 2003 Jun 24;100(13):7737-42 PMID: 12808139
  37. The clonal evolution of tumor cell populations.
    Science. 1976 Oct 1;194(4260):23-8 PMID: 959840
  38. Mapping and quantifying mammalian transcriptomes by RNA-Seq.
    Nat Methods. 2008 Jul;5(7):621-8 PMID: 18516045
  39. Tumor spreading to the contralateral ovary in bilateral ovarian carcinoma is a late event in clonal evolution.
    J Oncol. 2010;2010:646340 PMID: 19759843
  40. Recurring mutations found by sequencing an acute myeloid leukemia genome.
    N Engl J Med. 2009 Sep 10;361(11):1058-66 PMID: 19657110
  41. Genetic alterations in primary breast cancers and their metastases: direct comparison using modified comparative genomic hybridization.
    Genes Chromosomes Cancer. 1997 Aug;19(4):267-72 PMID: 9258662
  42. Tumour evolution inferred by single-cell sequencing.
    Nature. 2011 Apr 7;472(7341):90-4 PMID: 21399628
  43. Intratumor genetic heterogeneity in advanced human colorectal adenocarcinoma.
    Int J Cancer. 2001 Aug 1;93(3):346-52 PMID: 11433398
  44. Sensitive mutation detection in heterogeneous cancer specimens by massively parallel picoliter reactor sequencing.
    Nat Med. 2006 Jul;12(7):852-5 PMID: 16799556
  45. IgV gene intraclonal diversification and clonal evolution in B-cell chronic lymphocytic leukaemia.
    Br J Haematol. 2006 Apr;133(1):50-8 PMID: 16512828
  46. Comparative lesion sequencing provides insights into tumor evolution.
    Proc Natl Acad Sci U S A. 2008 Mar 18;105(11):4283-8 PMID: 18337506
  47. Advances in understanding cancer genomes through second-generation sequencing.
    Nat Rev Genet. 2010 Oct;11(10):685-96 PMID: 20847746
  48. Multiple metastases from cutaneous malignant melanoma patients may display heterogeneous genomic and epigenomic patterns.
    Melanoma Res. 2010 Oct;20(5):381-91 PMID: 20848731
  49. Chromosomal alterations in the clonal evolution to the metastatic stage of squamous cell carcinomas of the lung.
    Br J Cancer. 2000 Jan;82(1):65-73 PMID: 10638968
  50. Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution.
    Nature. 2009 Oct 8;461(7265):809-13 PMID: 19812674
  51. Core signaling pathways in human pancreatic cancers revealed by global genomic analyses.
    Science. 2008 Sep 26;321(5897):1801-6 PMID: 18772397
  52. Copy number and targeted mutational analysis reveals novel somatic events in metastatic prostate tumors.
    Genome Res. 2011 Jan;21(1):47-55 PMID: 21147910
  53. The genomic landscapes of human breast and colorectal cancers.
    Science. 2007 Nov 16;318(5853):1108-13 PMID: 17932254
  54. Distant metastasis occurs late during the genetic evolution of pancreatic cancer.
    Nature. 2010 Oct 28;467(7319):1114-7 PMID: 20981102
  55. Genetic heterogeneity and clonal evolution underlying development of asynchronous metastasis in human breast cancer.
    Cancer Res. 1997 Apr 15;57(8):1597-604 PMID: 9108466
Article Info
Journal
Seminars in cell & developmental biology
Abbr.
Semin Cell Dev Biol
ISSN
1096-3634
Published
2012-04-00
Epub
2012-00-08
Pages
237-42
Language
English
Region
England
NLM ID
9607332
PMCID
PMC3314157
Subset
IM
Grants
NCI NIH HHS · P50 CA062924-12S1 · United States
NCI NIH HHS · R01 CA140599 · United States
NCI NIH HHS · P50 CA062924-10S1 · United States
NCI NIH HHS · R01 CA140599-04 · United States
NCI NIH HHS · P50 CA62924 · United States
NCI NIH HHS · R01 CA140599-03 · United States
NCI NIH HHS · P50 CA062924-06 · United States
NCI NIH HHS · R01 CA140599-02 · United States
NCI NIH HHS · P50 CA062924-11 · United States
NCI NIH HHS · P50 CA062924-11S1 · United States
NCI NIH HHS · R01 CA140599-01 · United States
NCI NIH HHS · P50 CA062924-09 · United States
NCI NIH HHS · CA140599 · United States
NCI NIH HHS · P50 CA062924 · United States
NCI NIH HHS · P50 CA062924-08 · United States
NCI NIH HHS · P50 CA062924-10 · United States
NCI NIH HHS · P50 CA062924-12 · United States
NCI NIH HHS · P50 CA062924-07 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]