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PMID: 22286216 Published · epublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Somatic histone H3 alterations in pediatric diffuse intrinsic pontine gliomas and non-brainstem glioblastomas.

Nature genetics ·Vol. 44 ·No. 3 ·2012-01-29 ·Pages 251-3

Wu G, Broniscer A, McEachron TA, Lu C, Paugh BS, Becksfort J, Qu C, Ding L, Huether R, Parker M, Zhang J, Gajjar A, Dyer MA, Mullighan CG, Gilbertson RJ, Mardis ER, Wilson RK, Downing JR, Ellison DW, Zhang J, Baker SJ, St. Jude Children's Research Hospital–Washington University Pediatric Cancer Genome Project

Abstract

To identify somatic mutations in pediatric diffuse intrinsic pontine glioma (DIPG), we performed whole-genome sequencing of DNA from seven DIPGs and matched germline tissue and targeted sequencing of an additional 43 DIPGs and 36 non-brainstem pediatric glioblastomas (non-BS-PGs). We found that 78% of DIPGs and 22% of non-BS-PGs contained a mutation in H3F3A, encoding histone H3.3, or in the related HIST1H3B, encoding histone H3.1, that caused a p.Lys27Met amino acid substitution in each protein. An additional 14% of non-BS-PGs had somatic mutations in H3F3A causing a p.Gly34Arg alteration.

MeSH Terms
Base Sequence Brain Stem Neoplasms/genetics,pathology Genome, Human/genetics Glioblastoma/genetics Histones/genetics Humans Molecular Sequence Data Mutation, Missense/genetics Pons/pathology Sequence Analysis, DNA
Chemicals
Histones
Authors & Affiliations
22 authors, click to expand affiliations / ORCID
Wu Gang
Department of Computational Biology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Broniscer Alberto
McEachron Troy A
Lu Charles
Paugh Barbara S
Becksfort Jared
Qu Chunxu
Ding Li
Huether Robert
Parker Matthew
Zhang Junyuan
Gajjar Amar
Dyer Michael A
Mullighan Charles G
Gilbertson Richard J
Mardis Elaine R
Wilson Richard K
Downing James R
Ellison David W
Zhang Jinghui
Baker Suzanne J
St. Jude Children's Research Hospital–Washington University Pediatric Cancer Genome Project
References (12)
12 references, click to expand
  1. Supratentorial high-grade astrocytoma and diffuse brainstem glioma: two challenges for the pediatric oncologist.
    Oncologist. 2004;9(2):197-206 PMID: 15047924
  2. An integrated genomic analysis of human glioblastoma multiforme.
    Science. 2008 Sep 26;321(5897):1807-12 PMID: 18772396
  3. Whole-genome profiling of pediatric diffuse intrinsic pontine gliomas highlights platelet-derived growth factor receptor alpha and poly (ADP-ribose) polymerase as potential therapeutic targets.
    J Clin Oncol. 2010 Mar 10;28(8):1337-44 PMID: 20142589
  4. Genome-wide analyses identify recurrent amplifications of receptor tyrosine kinases and cell-cycle regulatory genes in diffuse intrinsic pontine glioma.
    J Clin Oncol. 2011 Oct 20;29(30):3999-4006 PMID: 21931021
  5. High-resolution profiling of histone methylations in the human genome.
    Cell. 2007 May 18;129(4):823-37 PMID: 17512414
  6. Genome-wide profiling using single-nucleotide polymorphism arrays identifies novel chromosomal imbalances in pediatric glioblastomas.
    Neuro Oncol. 2010 Feb;12(2):153-63 PMID: 20150382
  7. Integrated molecular genetic profiling of pediatric high-grade gliomas reveals key differences with the adult disease.
    J Clin Oncol. 2010 Jun 20;28(18):3061-8 PMID: 20479398
  8. Homozygous loss of ADAM3A revealed by genome-wide analysis of pediatric high-grade glioma and diffuse intrinsic pontine gliomas.
    Neuro Oncol. 2011 Feb;13(2):212-22 PMID: 21138945
  9. Histones: annotating chromatin.
    Annu Rev Genet. 2009;43:559-99 PMID: 19886812
  10. A distinct spectrum of copy number aberrations in pediatric high-grade gliomas.
    Clin Cancer Res. 2010 Jul 1;16(13):3368-77 PMID: 20570930
  11. Distinct factors control histone variant H3.3 localization at specific genomic regions.
    Cell. 2010 Mar 5;140(5):678-91 PMID: 20211137
  12. Histone onco-modifications.
    Oncogene. 2011 Aug 4;30(31):3391-403 PMID: 21516126
Article Info
Journal
Nature genetics
Abbr.
Nat Genet
ISSN
1546-1718
Published
2012-01-29
Epub
2012-00-29
Pages
251-3
Language
English
Region
United States
NLM ID
9216904
PMCID
PMC3288377
Subset
IM
Grants
NCI NIH HHS · R01 CA129541 · United States
NCI NIH HHS · P01 CA096832-08 · United States
NCI NIH HHS · R01 CA135554 · United States
NCI NIH HHS · CA096832 · United States
NCI NIH HHS · R01 CA135554-09 · United States
NCI NIH HHS · P01 CA096832 · United States
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