Home LiteratureArticle Details
PMID: 22500799 Published · ppublish English Journal Article Research Support, N.I.H., Extramural

Negative feedback enhances robustness in the yeast polarity establishment circuit.

Cell ·Vol. 149 ·No. 2 ·2012-04-13 ·Pages 322-33

Howell AS, Jin M, Wu CF, Zyla TR, Elston TC, Lew DJ

Abstract

Many cells undergo symmetry-breaking polarization toward a randomly oriented "front" in the absence of spatial cues. In budding yeast, such polarization involves a positive feedback loop that enables amplification of stochastically arising clusters of polarity factors. Previous mathematical modeling suggested that, if more than one cluster were amplified, the clusters would compete for limiting resources and the largest would "win," explaining why yeast cells always make one and only one bud. Here, using imaging with improved spatiotemporal resolution, we show the transient coexistence of multiple clusters during polarity establishment, as predicted by the model. Unexpectedly, we also find that initial polarity factor clustering is oscillatory, revealing the presence of a negative feedback loop that disperses the factors. Mathematical modeling predicts that negative feedback would confer robustness to the polarity circuit and make the kinetics of competition between polarity factor clusters relatively insensitive to polarity factor concentration. These predictions are confirmed experimentally.

MeSH Terms
Cell Polarity Feedback, Physiological Guanine Nucleotide Exchange Factors/metabolism Models, Biological Saccharomyces cerevisiae/cytology,metabolism Saccharomyces cerevisiae Proteins/metabolism cdc42 GTP-Binding Protein, Saccharomyces cerevisiae/metabolism
Chemicals
Guanine Nucleotide Exchange Factors Saccharomyces cerevisiae Proteins cdc42 GTP-Binding Protein, Saccharomyces cerevisiae
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Howell Audrey S
Department of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC 27710, USA.
Jin Meng
Wu Chi-Fang
Zyla Trevin R
Elston Timothy C
Lew Daniel J
References (40)
40 references, click to expand
  1. Branching of fungal hyphae: regulation, mechanisms and comparison with other branching systems.
    Mycologia. 2008 Nov-Dec;100(6):823-32 PMID: 19202837
  2. Singularity in polarization: rewiring yeast cells to make two buds.
    Cell. 2009 Nov 13;139(4):731-43 PMID: 19914166
  3. Septin ring assembly requires concerted action of polarisome components, a PAK kinase Cla4p, and the actin cytoskeleton in Saccharomyces cerevisiae.
    Mol Biol Cell. 2004 Dec;15(12):5329-45 PMID: 15371547
  4. The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome.
    Science. 2004 Apr 9;304(5668):304-7 PMID: 15001715
  5. Central roles of small GTPases in the development of cell polarity in yeast and beyond.
    Microbiol Mol Biol Rev. 2007 Mar;71(1):48-96 PMID: 17347519
  6. Membrane localization of scaffold proteins promotes graded signaling in the yeast MAP kinase cascade.
    Curr Biol. 2008 Aug 26;18(16):1184-91 PMID: 18722124
  7. Role of the septin ring in the asymmetric localization of proteins at the mother-bud neck in Saccharomyces cerevisiae.
    Mol Biol Cell. 2005 Aug;16(8):3455-66 PMID: 15901837
  8. Identification of novel, evolutionarily conserved Cdc42p-interacting proteins and of redundant pathways linking Cdc24p and Cdc42p to actin polarization in yeast.
    Mol Biol Cell. 2000 Feb;11(2):773-93 PMID: 10679030
  9. A system of counteracting feedback loops regulates Cdc42p activity during spontaneous cell polarization.
    Dev Cell. 2005 Oct;9(4):565-71 PMID: 16198298
  10. Maximal polar growth potential depends on the polarisome component AgSpa2 in the filamentous fungus Ashbya gossypii.
    Mol Biol Cell. 2003 Oct;14(10):4140-54 PMID: 12937275
  11. Key differences between lateral and apical branching in hyphae of Neurospora crassa.
    Fungal Genet Biol. 2004 Sep;41(9):842-51 PMID: 15288020
  12. Initial polarized bud growth by endocytic recycling in the absence of actin cable-dependent vesicle transport in yeast.
    Mol Biol Cell. 2010 Apr 1;21(7):1237-52 PMID: 20147449
  13. Assembly of scaffold-mediated complexes containing Cdc42p, the exchange factor Cdc24p, and the effector Cla4p required for cell cycle-regulated phosphorylation of Cdc24p.
    J Biol Chem. 2001 Mar 9;276(10):7176-86 PMID: 11113154
  14. Fast live simultaneous multiwavelength four-dimensional optical microscopy.
    Proc Natl Acad Sci U S A. 2010 Sep 14;107(37):16016-22 PMID: 20705899
  15. A comparison of mathematical models for polarization of single eukaryotic cells in response to guided cues.
    PLoS Comput Biol. 2011 Apr;7(4):e1001121 PMID: 21552548
  16. Adjacent positioning of cellular structures enabled by a Cdc42 GTPase-activating protein-mediated zone of inhibition.
    J Cell Biol. 2007 Dec 31;179(7):1375-84 PMID: 18166650
  17. Opposing roles for actin in Cdc42p polarization.
    Mol Biol Cell. 2005 Mar;16(3):1296-304 PMID: 15616194
  18. Cellular oscillations and the regulation of growth: the pollen tube paradigm.
    Bioessays. 2001 Jan;23(1):86-94 PMID: 11135313
  19. Robust cell polarity is a dynamic state established by coupling transport and GTPase signaling.
    J Cell Biol. 2004 Sep 13;166(6):889-900 PMID: 15353546
  20. From function to shape: a novel role of a formin in morphogenesis of the fungus Ashbya gossypii.
    Mol Biol Cell. 2006 Jan;17(1):130-45 PMID: 16236798
  21. Modeling vesicle traffic reveals unexpected consequences for Cdc42p-mediated polarity establishment.
    Curr Biol. 2011 Feb 8;21(3):184-94 PMID: 21277209
  22. Septin structure and function in yeast and beyond.
    Trends Cell Biol. 2011 Mar;21(3):141-8 PMID: 21177106
  23. Scaffold-mediated symmetry breaking by Cdc42p.
    Nat Cell Biol. 2003 Dec;5(12):1062-70 PMID: 14625559
  24. Multicopy suppression of the cdc24 budding defect in yeast by CDC42 and three newly identified genes including the ras-related gene RSR1.
    Proc Natl Acad Sci U S A. 1989 Dec;86(24):9976-80 PMID: 2690082
  25. On the spontaneous emergence of cell polarity.
    Nature. 2008 Aug 14;454(7206):886-9 PMID: 18704086
  26. Polarized cell growth in higher plants.
    Annu Rev Cell Dev Biol. 2001;17:159-87 PMID: 11687487
  27. Calcium participates in feedback regulation of the oscillating ROP1 Rho GTPase in pollen tubes.
    Proc Natl Acad Sci U S A. 2009 Dec 22;106(51):22002-7 PMID: 19955439
  28. Design principles of biochemical oscillators.
    Nat Rev Mol Cell Biol. 2008 Dec;9(12):981-91 PMID: 18971947
  29. Phosphorylation of the Cdc42 exchange factor Cdc24 by the PAK-like kinase Cla4 may regulate polarized growth in yeast.
    Mol Cell. 2000 Nov;6(5):1155-67 PMID: 11106754
  30. High rates of actin filament turnover in budding yeast and roles for actin in establishment and maintenance of cell polarity revealed using the actin inhibitor latrunculin-A.
    J Cell Biol. 1997 Apr 21;137(2):399-416 PMID: 9128251
  31. Oscillatory signaling processes: the how, the why and the where.
    Curr Opin Genet Dev. 2010 Dec;20(6):665-9 PMID: 20971631
  32. Dynamics of Cdc42 network embodies a Turing-type mechanism of yeast cell polarity.
    FEBS Lett. 2008 Apr 30;582(10):1437-43 PMID: 18381072
  33. Genetic evidence for a functional interaction between Saccharomyces cerevisiae CDC24 and CDC42.
    Yeast. 1994 Apr;10(4):463-74 PMID: 7941732
  34. Septins: molecular partitioning and the generation of cellular asymmetry.
    Cell Div. 2009 Aug 26;4:18 PMID: 19709431
  35. Genetic control of bud site selection in yeast by a set of gene products that constitute a morphogenetic pathway.
    Cell. 1991 Jun 28;65(7):1203-12 PMID: 2065354
  36. Symmetry breaking and the establishment of cell polarity in budding yeast.
    Curr Opin Genet Dev. 2011 Dec;21(6):740-6 PMID: 21955794
  37. Feedback loops shape cellular signals in space and time.
    Science. 2008 Oct 17;322(5900):390-5 PMID: 18927383
  38. Symmetry-breaking polarization driven by a Cdc42p GEF-PAK complex.
    Curr Biol. 2008 Nov 25;18(22):1719-26 PMID: 19013066
  39. Dynamics of septin ring and collar formation in Saccharomyces cerevisiae.
    Biol Chem. 2011 Aug;392(8-9):689-97 PMID: 21736496
  40. Phosphorylation of Bem2p and Bem3p may contribute to local activation of Cdc42p at bud emergence.
    EMBO J. 2007 Oct 31;26(21):4501-13 PMID: 17914457
Article Info
Journal
Cell
Abbr.
Cell
ISSN
1097-4172
Published
2012-04-13
Pages
322-33
Language
English
Region
United States
NLM ID
0413066
PMCID
PMC3680131
Subset
IM
Grants
NIGMS NIH HHS · GM62300 · United States
NIGMS NIH HHS · R01 GM079271 · United States
NIGMS NIH HHS · GM84071 · United States
NIGMS NIH HHS · R01 GM062300 · United States
NIGMS NIH HHS · GM79271 · United States
NIGMS NIH HHS · R01 GM084071 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]