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PMID: 23001123 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Mutations in ADAR1 cause Aicardi-Goutières syndrome associated with a type I interferon signature.

Nature genetics ·Vol. 44 ·No. 11 ·2012-11-00 ·Pages 1243-8

Rice GI, Kasher PR, Forte GM, Mannion NM, Greenwood SM, Szynkiewicz M, Dickerson JE, Bhaskar SS, Zampini M, Briggs TA, Jenkinson EM, Bacino CA, Battini R, Bertini E, Brogan PA, Brueton LA, Carpanelli M, De Laet C, de Lonlay P, del Toro M, Desguerre I, Fazzi E, Garcia-Cazorla A, Heiberg A, Kawaguchi M, Kumar R, Lin JP, Lourenco CM, Male AM, Marques W, Mignot C, Olivieri I, Orcesi S, Prabhakar P, Rasmussen M, Robinson RA, Rozenberg F, Schmidt JL, Steindl K, Tan TY, van der Merwe WG, Vanderver A, Vassallo G, Wakeling EL, Wassmer E, Whittaker E, Livingston JH, Lebon P, Suzuki T, McLaughlin PJ, Keegan LP, O'Connell MA, Lovell SC, Crow YJ

Abstract

Adenosine deaminases acting on RNA (ADARs) catalyze the hydrolytic deamination of adenosine to inosine in double-stranded RNA (dsRNA) and thereby potentially alter the information content and structure of cellular RNAs. Notably, although the overwhelming majority of such editing events occur in transcripts derived from Alu repeat elements, the biological function of non-coding RNA editing remains uncertain. Here, we show that mutations in ADAR1 (also known as ADAR) cause the autoimmune disorder Aicardi-Goutières syndrome (AGS). As in Adar1-null mice, the human disease state is associated with upregulation of interferon-stimulated genes, indicating a possible role for ADAR1 as a suppressor of type I interferon signaling. Considering recent insights derived from the study of other AGS-related proteins, we speculate that ADAR1 may limit the cytoplasmic accumulation of the dsRNA generated from genomic repetitive elements.

MeSH Terms
Adenosine Deaminase/genetics Alu Elements/genetics Animals Autoimmune Diseases of the Nervous System/genetics Exome Gene Expression Humans Interferon Type I/genetics,metabolism Mice Mutation Nervous System Malformations/genetics Protein Conformation RNA, Double-Stranded/genetics,metabolism RNA-Binding Proteins Sequence Analysis, DNA Signal Transduction Structure-Activity Relationship
Chemicals
Interferon Type I RNA, Double-Stranded RNA-Binding Proteins ADARB1 protein, human Adenosine Deaminase
Authors & Affiliations
54 authors, click to expand affiliations / ORCID
Rice Gillian I
Manchester Academic Health Science Centre, University of Manchester, Genetic Medicine, UK.
Kasher Paul R
Forte Gabriella M A
Mannion Niamh M
Greenwood Sam M
Szynkiewicz Marcin
Dickerson Jonathan E
Bhaskar Sanjeev S
Zampini Massimiliano
Briggs Tracy A
Jenkinson Emma M
Bacino Carlos A
Battini Roberta
Bertini Enrico
Brogan Paul A
Brueton Louise A
Carpanelli Marialuisa
De Laet Corinne
de Lonlay Pascale
del Toro Mireia
Desguerre Isabelle
Fazzi Elisa
Garcia-Cazorla Angels
Heiberg Arvid
Kawaguchi Masakazu
Kumar Ram
Lin Jean-Pierre S-M
Lourenco Charles M
Male Alison M
Marques Wilson
Mignot Cyril
Olivieri Ivana
Orcesi Simona
Prabhakar Prab
Rasmussen Magnhild
Robinson Robert A
Rozenberg Flore
Schmidt Johanna L
Steindl Katharina
Tan Tiong Y
van der Merwe William G
Vanderver Adeline
Vassallo Grace
Wakeling Emma L
Wassmer Evangeline
Whittaker Elizabeth
Livingston John H
Lebon Pierre
Suzuki Tamio
McLaughlin Paul J
Keegan Liam P
O'Connell Mary A
Lovell Simon C
Crow Yanick J
Supplementary Concepts
Aicardi-Goutieres syndrome (Disease)
References (52)
52 references, click to expand
  1. Double-stranded RNAs containing multiple IU pairs are sufficient to suppress interferon induction and apoptosis.
    Nat Struct Mol Biol. 2010 Sep;17(9):1043-50 PMID: 20694008
  2. Clustal W and Clustal X version 2.0.
    Bioinformatics. 2007 Nov 1;23(21):2947-8 PMID: 17846036
  3. The cytosolic exonuclease TREX1 inhibits the innate immune response to human immunodeficiency virus type 1.
    Nat Immunol. 2010 Nov;11(11):1005-13 PMID: 20871604
  4. The penultimate rotamer library.
    Proteins. 2000 Aug 15;40(3):389-408 PMID: 10861930
  5. Aicardi-Goutières syndrome: an important Mendelian mimic of congenital infection.
    Dev Med Child Neurol. 2008 Jun;50(6):410-6 PMID: 18422679
  6. Competition between ADAR and RNAi pathways for an extensive class of RNA targets.
    Nat Struct Mol Biol. 2011 Sep 11;18(10):1094-101 PMID: 21909095
  7. An autoimmune disease prevented by anti-retroviral drugs.
    Retrovirology. 2011 Nov 08;8:91 PMID: 22067273
  8. Dyschromatosis symmetrica hereditaria associated with neurological disorders.
    J Dermatol. 2008 Oct;35(10):662-6 PMID: 19017046
  9. SAMHD1 restricts the replication of human immunodeficiency virus type 1 by depleting the intracellular pool of deoxynucleoside triphosphates.
    Nat Immunol. 2012 Feb 12;13(3):223-228 PMID: 22327569
  10. A Z-DNA binding domain present in the human editing enzyme, double-stranded RNA adenosine deaminase.
    Proc Natl Acad Sci U S A. 1997 Aug 5;94(16):8421-6 PMID: 9237992
  11. Mutations in genes encoding ribonuclease H2 subunits cause Aicardi-Goutières syndrome and mimic congenital viral brain infection.
    Nat Genet. 2006 Aug;38(8):910-6 PMID: 16845400
  12. ADAR1 RNA deaminase limits short interfering RNA efficacy in mammalian cells.
    J Biol Chem. 2005 Feb 4;280(5):3946-53 PMID: 15556947
  13. Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation.
    J Mol Biol. 1999 Jan 29;285(4):1735-47 PMID: 9917408
  14. Dystonia, mental deterioration, and dyschromatosis symmetrica hereditaria in a family with ADAR1 mutation.
    Mov Disord. 2006 Sep;21(9):1510-3 PMID: 16817193
  15. Chilblains as a diagnostic sign of aicardi-goutières syndrome.
    Neuropediatrics. 2010 Feb;41(1):18-23 PMID: 20571986
  16. Editing independent effects of ADARs on the miRNA/siRNA pathways.
    EMBO J. 2009 Oct 21;28(20):3145-56 PMID: 19713932
  17. Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA.
    Science. 1999 Jun 11;284(5421):1841-5 PMID: 10364558
  18. Comparative protein modelling by satisfaction of spatial restraints.
    J Mol Biol. 1993 Dec 5;234(3):779-815 PMID: 8254673
  19. Clinical and molecular phenotype of Aicardi-Goutieres syndrome.
    Am J Hum Genet. 2007 Oct;81(4):713-25 PMID: 17846997
  20. Crystal structure of Staphylococcus aureus tRNA adenosine deaminase TadA in complex with RNA.
    Nat Struct Mol Biol. 2006 Feb;13(2):153-9 PMID: 16415880
  21. Autoimmunity initiates in nonhematopoietic cells and progresses via lymphocytes in an interferon-dependent autoimmune disease.
    Immunity. 2012 Jan 27;36(1):120-31 PMID: 22284419
  22. The solution structure of the ADAR2 dsRBM-RNA complex reveals a sequence-specific readout of the minor groove.
    Cell. 2010 Oct 15;143(2):225-37 PMID: 20946981
  23. ADAR1 is essential for the maintenance of hematopoiesis and suppression of interferon signaling.
    Nat Immunol. 2009 Jan;10(1):109-15 PMID: 19060901
  24. Systematic identification of abundant A-to-I editing sites in the human transcriptome.
    Nat Biotechnol. 2004 Aug;22(8):1001-5 PMID: 15258596
  25. Six novel mutations of the ADAR1 gene in patients with dyschromatosis symmetrica hereditaria: histological observation and comparison of genotypes and clinical phenotypes.
    J Dermatol. 2008 Jul;35(7):395-406 PMID: 18705826
  26. Human RNA-specific adenosine deaminase ADAR1 transcripts possess alternative exon 1 structures that initiate from different promoters, one constitutively active and the other interferon inducible.
    Proc Natl Acad Sci U S A. 1999 Apr 13;96(8):4621-6 PMID: 10200312
  27. Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome.
    PLoS Biol. 2004 Dec;2(12):e391 PMID: 15534692
  28. Expanding the phenotypic spectrum of lupus erythematosus in Aicardi-Goutières syndrome.
    Arthritis Rheum. 2010 May;62(5):1469-77 PMID: 20131292
  29. Widespread RNA editing of embedded alu elements in the human transcriptome.
    Genome Res. 2004 Sep;14(9):1719-25 PMID: 15342557
  30. Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms.
    J Mol Biol. 1999 Jan 29;285(4):1711-33 PMID: 9917407
  31. Requirement of dimerization for RNA editing activity of adenosine deaminases acting on RNA.
    J Biol Chem. 2003 May 9;278(19):17093-102 PMID: 12618436
  32. KING (Kinemage, Next Generation): a versatile interactive molecular and scientific visualization program.
    Protein Sci. 2009 Nov;18(11):2403-9 PMID: 19768809
  33. Mutations in the gene encoding the 3'-5' DNA exonuclease TREX1 cause Aicardi-Goutières syndrome at the AGS1 locus.
    Nat Genet. 2006 Aug;38(8):917-20 PMID: 16845398
  34. A de novo p.Asp18Asn mutation in TREX1 in a patient with Aicardi-Goutières syndrome.
    Am J Med Genet A. 2010 Oct;152A(10):2612-7 PMID: 20799324
  35. RNA editing by mammalian ADARs.
    Adv Genet. 2011;73:87-120 PMID: 21310295
  36. A survey of RNA editing in human brain.
    Genome Res. 2004 Dec;14(12):2379-87 PMID: 15545495
  37. Patients with systemic lupus erythematosus, myositis, rheumatoid arthritis and scleroderma share activation of a common type I interferon pathway.
    Ann Rheum Dis. 2011 Nov;70(11):2029-36 PMID: 21803750
  38. Inositol hexakisphosphate is bound in the ADAR2 core and required for RNA editing.
    Science. 2005 Sep 2;309(5740):1534-9 PMID: 16141067
  39. Intrathecal synthesis of interferon-alpha in infants with progressive familial encephalopathy.
    J Neurol Sci. 1988 Apr;84(2-3):201-8 PMID: 2837539
  40. Mutations involved in Aicardi-Goutières syndrome implicate SAMHD1 as regulator of the innate immune response.
    Nat Genet. 2009 Jul;41(7):829-32 PMID: 19525956
  41. Heterozygous mutations in TREX1 cause familial chilblain lupus and dominant Aicardi-Goutieres syndrome.
    Am J Hum Genet. 2007 Apr;80(4):811-5 PMID: 17357087
  42. SAMHD1 is the dendritic- and myeloid-cell-specific HIV-1 restriction factor counteracted by Vpx.
    Nature. 2011 May 25;474(7353):654-7 PMID: 21613998
  43. Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein.
    Nature. 2011 Jun 29;474(7353):658-61 PMID: 21720370
  44. Type I interferonopathies: a novel set of inborn errors of immunity.
    Ann N Y Acad Sci. 2011 Nov;1238:91-8 PMID: 22129056
  45. HIV-1 restriction factor SAMHD1 is a deoxynucleoside triphosphate triphosphohydrolase.
    Nature. 2011 Nov 06;480(7377):379-82 PMID: 22056990
  46. An ADAR that edits transcripts encoding ion channel subunits functions as a dimer.
    EMBO J. 2003 Jul 1;22(13):3421-30 PMID: 12840004
  47. Trex1 prevents cell-intrinsic initiation of autoimmunity.
    Cell. 2008 Aug 22;134(4):587-98 PMID: 18724932
  48. ADAR editing in double-stranded UTRs and other noncoding RNA sequences.
    Trends Biochem Sci. 2010 Jul;35(7):377-83 PMID: 20382028
  49. Development of Potential Pharmacodynamic and Diagnostic Markers for Anti-IFN-α Monoclonal Antibody Trials in Systemic Lupus Erythematosus.
    Hum Genomics Proteomics. 2009 Nov 17;2009: PMID: 20948567
  50. Mutational spectrum of the ADAR1 gene in dyschromatosis symmetrica hereditaria.
    Arch Dermatol Res. 2010 Aug;302(6):469-76 PMID: 20186421
  51. Mutations of the RNA-specific adenosine deaminase gene (DSRAD) are involved in dyschromatosis symmetrica hereditaria.
    Am J Hum Genet. 2003 Sep;73(3):693-9 PMID: 12916015
  52. Automated genome-wide visual profiling of cellular proteins involved in HIV infection.
    J Biomol Screen. 2011 Oct;16(9):945-58 PMID: 21841144
Article Info
Journal
Nature genetics
Abbr.
Nat Genet
ISSN
1546-1718
Published
2012-11-00
Epub
2012-00-23
Pages
1243-8
Language
English
Region
United States
NLM ID
9216904
PMCID
PMC4154508
Subset
IM
Grants
NHLBI NIH HHS · RC2 HL102926 · United States
NHLBI NIH HHS · RC2 HL102924 · United States
NHLBI NIH HHS · HL-102926 · United States
NHLBI NIH HHS · HL-102925 · United States
NHLBI NIH HHS · RC2 HL103010 · United States
NHLBI NIH HHS · HL-102923 · United States
NHLBI NIH HHS · RC2 HL102923 · United States
NHLBI NIH HHS · UC2 HL102926 · United States
NHLBI NIH HHS · UC2 HL103010 · United States
NHLBI NIH HHS · HL-103010 · United States
NINDS NIH HHS · K08 NS060695 · United States
NHLBI NIH HHS · HL-102924 · United States
NHLBI NIH HHS · UC2 HL102923 · United States
NHLBI NIH HHS · UC2 HL102924 · United States
NHLBI NIH HHS · RC2 HL102925 · United States
NHLBI NIH HHS · UC2 HL102925 · United States
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