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PMID: 23180760 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Genomics of Drug Sensitivity in Cancer (GDSC): a resource for therapeutic biomarker discovery in cancer cells.

Nucleic acids research ·Vol. 41 ·No. Database issue ·2013-01-00 ·Pages D955-61

Yang W, Soares J, Greninger P, Edelman EJ, Lightfoot H, Forbes S, Bindal N, Beare D, Smith JA, Thompson IR, Ramaswamy S, Futreal PA, Haber DA, Stratton MR, Benes C, McDermott U, Garnett MJ

Abstract

Alterations in cancer genomes strongly influence clinical responses to treatment and in many instances are potent biomarkers for response to drugs. The Genomics of Drug Sensitivity in Cancer (GDSC) database (www.cancerRxgene.org) is the largest public resource for information on drug sensitivity in cancer cells and molecular markers of drug response. Data are freely available without restriction. GDSC currently contains drug sensitivity data for almost 75 000 experiments, describing response to 138 anticancer drugs across almost 700 cancer cell lines. To identify molecular markers of drug response, cell line drug sensitivity data are integrated with large genomic datasets obtained from the Catalogue of Somatic Mutations in Cancer database, including information on somatic mutations in cancer genes, gene amplification and deletion, tissue type and transcriptional data. Analysis of GDSC data is through a web portal focused on identifying molecular biomarkers of drug sensitivity based on queries of specific anticancer drugs or cancer genes. Graphical representations of the data are used throughout with links to related resources and all datasets are fully downloadable. GDSC provides a unique resource incorporating large drug sensitivity and genomic datasets to facilitate the discovery of new therapeutic biomarkers for cancer therapies.

MeSH Terms
Antineoplastic Agents/pharmacology Cell Line, Tumor Computer Graphics Databases, Genetic Genes, Neoplasm Genetic Markers Genomics Humans Internet Mutation Neoplasms/drug therapy,genetics
Chemicals
Antineoplastic Agents Genetic Markers
Authors & Affiliations
17 authors, click to expand affiliations / ORCID
Yang Wanjuan
Cancer Genome Project, Wellcome Trust Sanger Institute, Hinxton CB10 1SA, UK.
Soares Jorge
Greninger Patricia
Edelman Elena J
Lightfoot Howard
Forbes Simon
Bindal Nidhi
Beare Dave
Smith James A
Thompson I Richard
Ramaswamy Sridhar
Futreal P Andrew
Haber Daniel A
Stratton Michael R
Benes Cyril
McDermott Ultan
Garnett Mathew J
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2013-01-00
Epub
2012-00-23
Pages
D955-61
Language
English
Region
England
NLM ID
0411011
PMCID
PMC3531057
Subset
IM
Grants
Wellcome Trust · 086357 · United Kingdom
Cancer Research UK · United Kingdom
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