Home LiteratureArticle Details
PMID: 2326182 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

A factor binding GATAAG confers tissue specificity on the promoter of the human zeta-globin gene.

Nucleic acids research ·Vol. 18 ·No. 6 ·1990-03-25 ·Pages 1339-50

Watt P, Lamb P, Squire L, Proudfoot N

Abstract

We describe the characterisation of cis-acting sequences which control the tissue specific expression of the human zeta globin gene. An extensive search for enhancer sequences in the vicinity of this gene proved negative. Instead our data demonstrate that the minimal promoter of the zeta gene is itself tissue specific. Sequences close to and possibly including the -100 CACCC and -70 CCAAT boxes display some erythroid specificity. However the principal tissue specific element is a GATAA sequence at -120 directly adjacent to the minimal promoter. Specific deletion of GATAA reduces zeta promoter activity 5 fold in erythroid but not non-erythroid cells. We also demonstrate that an erythroid specific factor binds to this GATAA sequence. Furthermore this factor forms a complex with the transcription factor CP1 which we show interacts with the zeta CCAAT box. We present evidence that the zeta GATAA binding factor is equivalent to GF1 recently purified and cloned by Tsai et al [1]. The erythroid specific GATAA sequence has been found in the promoters and enhancers of a number of erythroid specific genes. Similarly we show here that the zeta globin gene relies on a GATAA sequence in its promoter to specify its expression in erythroid cells.

MeSH Terms
Animals Base Sequence Cell Line Cloning, Molecular DNA Probes DNA-Binding Proteins/metabolism Deoxyribonuclease I Enhancer Elements, Genetic Genes Genetic Vectors Globins/genetics Humans Molecular Sequence Data Mutation Oligonucleotide Probes Plasmids Promoter Regions, Genetic Restriction Mapping Transfection
Chemicals
DNA Probes DNA-Binding Proteins Oligonucleotide Probes Globins Deoxyribonuclease I
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Watt P
Sir William Dunn School of Pathology, University of Oxford, UK.
Lamb P
Squire L
Proudfoot N
References (30)
30 references, click to expand
  1. A new technique for the assay of infectivity of human adenovirus 5 DNA.
    Virology. 1973 Apr;52(2):456-67 PMID: 4705382
  2. Cloning of cDNA for the major DNA-binding protein of the erythroid lineage through expression in mammalian cells.
    Nature. 1989 Jun 8;339(6224):446-51 PMID: 2725678
  3. Erythroleukemic differentiation.
    Annu Rev Biochem. 1978;47:419-48 PMID: 354501
  4. Hybridization of a myeloid leukemia-derived human cell line (K562) with a human Burkitt's lymphoma line (P3HR-1).
    J Natl Cancer Inst. 1980 Apr;64(4):725-38 PMID: 6245297
  5. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  6. A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system.
    Nucleic Acids Res. 1981 Jul 10;9(13):3047-60 PMID: 6269071
  7. Recombinant genomes which express chloramphenicol acetyltransferase in mammalian cells.
    Mol Cell Biol. 1982 Sep;2(9):1044-51 PMID: 6960240
  8. The structure of the human zeta-globin gene and a closely linked, nearly identical pseudogene.
    Cell. 1982 Dec;31(3 Pt 2):553-63 PMID: 6297773
  9. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei.
    Nucleic Acids Res. 1983 Mar 11;11(5):1475-89 PMID: 6828386
  10. cis and trans activation of globin gene transcription in transient assays.
    Proc Natl Acad Sci U S A. 1983 Dec;80(24):7428-32 PMID: 6200874
  11. Transcriptional analysis of human zeta globin genes.
    EMBO J. 1984 Jul;3(7):1533-40 PMID: 6745241
  12. Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter.
    Nucleic Acids Res. 1984 Sep 25;12(18):7035-56 PMID: 6091052
  13. Two distinct enhancers with different cell specificities coexist in the regulatory region of polyoma.
    Cell. 1984 Dec;39(3 Pt 2):653-62 PMID: 6096017
  14. The molecular genetics of human hemoglobin.
    Prog Nucleic Acid Res Mol Biol. 1984;31:315-462 PMID: 6397774
  15. Homologous recognition of a promoter domain common to the MSV LTR and the HSV tk gene.
    Cell. 1986 Feb 28;44(4):565-76 PMID: 3004739
  16. A cellular DNA-binding protein that activates eukaryotic transcription and DNA replication.
    Cell. 1987 Jan 16;48(1):79-89 PMID: 3024847
  17. Position-independent, high-level expression of the human beta-globin gene in transgenic mice.
    Cell. 1987 Dec 24;51(6):975-85 PMID: 3690667
  18. A yeast and a human CCAAT-binding protein have heterologous subunits that are functionally interchangeable.
    Cell. 1988 Apr 8;53(1):25-35 PMID: 3280141
  19. The human beta-globin gene contains multiple regulatory regions: identification of one promoter and two downstream enhancers.
    EMBO J. 1988 Feb;7(2):377-84 PMID: 2835225
  20. An erythrocyte-specific DNA-binding factor recognizes a regulatory sequence common to all chicken globin genes.
    Proc Natl Acad Sci U S A. 1988 Aug;85(16):5976-80 PMID: 3413070
  21. Mutational analysis of the chicken beta-globin enhancer reveals two positive-acting domains.
    Proc Natl Acad Sci U S A. 1988 Sep;85(17):6267-71 PMID: 3166139
  22. The effects of HPFH mutations in the human gamma-globin promoter on binding of ubiquitous and erythroid specific nuclear factors.
    Nucleic Acids Res. 1988 Aug 25;16(16):7783-97 PMID: 2458563
  23. The -117 mutation in Greek HPFH affects the binding of three nuclear factors to the CCAAT region of the gamma-globin gene.
    EMBO J. 1988 Oct;7(10):3099-107 PMID: 3181130
  24. The human beta-globin gene 3' enhancer contains multiple binding sites for an erythroid-specific protein.
    Genes Dev. 1988 Sep;2(9):1089-100 PMID: 2461328
  25. Two tissue-specific factors bind the erythroid promoter of the human porphobilinogen deaminase gene.
    Nucleic Acids Res. 1989 Jan 11;17(1):37-54 PMID: 2911469
  26. GATAAG; a cis-control region binding an erythroid-specific nuclear factor with a role in globin and non-globin gene expression.
    Nucleic Acids Res. 1989 Jan 11;17(1):73-92 PMID: 2911489
  27. Transcriptional promiscuity of the human alpha-globin gene.
    Mol Cell Biol. 1989 Jan;9(1):241-51 PMID: 2538719
  28. Increased gamma-globin expression in a nondeletion HPFH mediated by an erythroid-specific DNA-binding factor.
    Nature. 1989 Mar 30;338(6214):435-8 PMID: 2467208
  29. The human beta-globin promoter; nuclear protein factors and erythroid specific induction of transcription.
    EMBO J. 1988 Dec 20;7(13):4203-12 PMID: 3243278
  30. Human chronic myelogenous leukemia cell-line with positive Philadelphia chromosome.
    Blood. 1975 Mar;45(3):321-34 PMID: 163658
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1990-03-25
Pages
1339-50
Language
English
Region
England
NLM ID
0411011
PMCID
PMC330496
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]