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PMID: 23604321 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

TFEB controls cellular lipid metabolism through a starvation-induced autoregulatory loop.

Nature cell biology ·Vol. 15 ·No. 6 ·2013-06-00 ·Pages 647-58

Settembre C, De Cegli R, Mansueto G, Saha PK, Vetrini F, Visvikis O, Huynh T, Carissimo A, Palmer D, Klisch TJ, Wollenberg AC, Di Bernardo D, Chan L, Irazoqui JE, Ballabio A

Abstract

The lysosomal-autophagic pathway is activated by starvation and plays an important role in both cellular clearance and lipid catabolism. However, the transcriptional regulation of this pathway in response to metabolic cues is uncharacterized. Here we show that the transcription factor EB (TFEB), a master regulator of lysosomal biogenesis and autophagy, is induced by starvation through an autoregulatory feedback loop and exerts a global transcriptional control on lipid catabolism via Ppargc1α and Ppar1α. Thus, during starvation a transcriptional mechanism links the autophagic pathway to cellular energy metabolism. The conservation of this mechanism in Caenorhabditis elegans suggests a fundamental role for TFEB in the evolution of the adaptive response to food deprivation. Viral delivery of TFEB to the liver prevented weight gain and metabolic syndrome in both diet-induced and genetic mouse models of obesity, suggesting a new therapeutic strategy for disorders of lipid metabolism.

MeSH Terms
Animals Autophagy/genetics Basic Helix-Loop-Helix Leucine Zipper Transcription Factors/metabolism,pharmacology Caenorhabditis elegans/metabolism Cell Line, Tumor Energy Metabolism Feedback, Physiological Gene Expression Regulation HeLa Cells Homeostasis Humans Lipid Metabolism Liver/metabolism Lysosomes/genetics Male Metabolic Syndrome/genetics,metabolism,prevention & control Mice Mice, Inbred C57BL Mice, Transgenic Obesity/genetics,metabolism PPAR alpha/metabolism Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha Starvation/genetics,metabolism Trans-Activators/metabolism Transcription Factors Transcription, Genetic Weight Gain
Chemicals
Basic Helix-Loop-Helix Leucine Zipper Transcription Factors PPAR alpha Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha Ppargc1a protein, mouse Tcfeb protein, mouse Trans-Activators Transcription Factors
Authors & Affiliations
15 authors, click to expand affiliations / ORCID
Settembre Carmine
Telethon Institute of Genetics and Medicine (TIGEM), Naples, Italy. [email protected]
De Cegli Rossella
Mansueto Gelsomina
Saha Pradip K
Vetrini Francesco
Visvikis Orane
Huynh Tuong
Carissimo Annamaria
Palmer Donna
Klisch Tiemo Jürgen
Wollenberg Amanda C
Di Bernardo Diego
Chan Lawrence
Irazoqui Javier E
Ballabio Andrea
References (39)
39 references, click to expand
  1. Metabolic control through the PGC-1 family of transcription coactivators.
    Cell Metab. 2005 Jun;1(6):361-70 PMID: 16054085
  2. Biological control through regulated transcriptional coactivators.
    Cell. 2004 Oct 15;119(2):157-67 PMID: 15479634
  3. Homeostatic levels of p62 control cytoplasmic inclusion body formation in autophagy-deficient mice.
    Cell. 2007 Dec 14;131(6):1149-63 PMID: 18083104
  4. A lysosome-to-nucleus signalling mechanism senses and regulates the lysosome via mTOR and TFEB.
    EMBO J. 2012 Mar 7;31(5):1095-108 PMID: 22343943
  5. DAVID: Database for Annotation, Visualization, and Integrated Discovery.
    Genome Biol. 2003;4(5):P3 PMID: 12734009
  6. Starvation response in mouse liver shows strong correlation with life-span-prolonging processes.
    Physiol Genomics. 2004 Apr 13;17(2):230-44 PMID: 14762175
  7. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors.
    Cell. 2009 Jul 23;138(2):314-27 PMID: 19632181
  8. Defective hepatic autophagy in obesity promotes ER stress and causes insulin resistance.
    Cell Metab. 2010 Jun 9;11(6):467-78 PMID: 20519119
  9. Construction and modelling of an inducible positive feedback loop stably integrated in a mammalian cell-line.
    PLoS Comput Biol. 2011 Jun;7(6):e1002074 PMID: 21765813
  10. A Caenorhabditis elegans nutrient response system partially dependent on nuclear receptor NHR-49.
    Proc Natl Acad Sci U S A. 2005 Sep 20;102(38):13496-501 PMID: 16157872
  11. Arresting development arrests aging in the nematode Caenorhabditis elegans.
    Mech Ageing Dev. 1984 Nov;28(1):23-40 PMID: 6542614
  12. A gene network regulating lysosomal biogenesis and function.
    Science. 2009 Jul 24;325(5939):473-7 PMID: 19556463
  13. Impairment of starvation-induced and constitutive autophagy in Atg7-deficient mice.
    J Cell Biol. 2005 May 9;169(3):425-34 PMID: 15866887
  14. A PGC1-α-dependent myokine that drives brown-fat-like development of white fat and thermogenesis.
    Nature. 2012 Jan 11;481(7382):463-8 PMID: 22237023
  15. The transcription factor TFEB links mTORC1 signaling to transcriptional control of lysosome homeostasis.
    Sci Signal. 2012 Jun 12;5(228):ra42 PMID: 22692423
  16. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
    Nat Protoc. 2009;4(1):44-57 PMID: 19131956
  17. An autoregulatory loop controls peroxisome proliferator-activated receptor gamma coactivator 1alpha expression in muscle.
    Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):7111-6 PMID: 12764228
  18. Endocrine regulation of the fasting response by PPARalpha-mediated induction of fibroblast growth factor 21.
    Cell Metab. 2007 Jun;5(6):415-25 PMID: 17550777
  19. The transcriptomic signature of fasting murine liver.
    BMC Genomics. 2008 Nov 06;9:528 PMID: 18990241
  20. Nutrient control of gene expression in Drosophila: microarray analysis of starvation and sugar-dependent response.
    EMBO J. 2002 Nov 15;21(22):6162-73 PMID: 12426388
  21. Proteolytic and lipolytic responses to starvation.
    Nutrition. 2006 Jul-Aug;22(7-8):830-44 PMID: 16815497
  22. Autophagy: process and function.
    Genes Dev. 2007 Nov 15;21(22):2861-73 PMID: 18006683
  23. Characterization of the CLEAR network reveals an integrated control of cellular clearance pathways.
    Hum Mol Genet. 2011 Oct 1;20(19):3852-66 PMID: 21752829
  24. MTORC1 functions as a transcriptional regulator of autophagy by preventing nuclear transport of TFEB.
    Autophagy. 2012 Jun;8(6):903-14 PMID: 22576015
  25. The coactivator PGC-1 cooperates with peroxisome proliferator-activated receptor alpha in transcriptional control of nuclear genes encoding mitochondrial fatty acid oxidation enzymes.
    Mol Cell Biol. 2000 Mar;20(5):1868-76 PMID: 10669761
  26. Interorgan coordination of the murine adaptive response to fasting.
    J Biol Chem. 2011 May 6;286(18):16332-43 PMID: 21393243
  27. Autophagy regulates lipid metabolism.
    Nature. 2009 Apr 30;458(7242):1131-5 PMID: 19339967
  28. Extending healthy life span--from yeast to humans.
    Science. 2010 Apr 16;328(5976):321-6 PMID: 20395504
  29. Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion.
    EMBO J. 2001 May 15;20(10):2528-35 PMID: 11350942
  30. PGC-1α rescues Huntington's disease proteotoxicity by preventing oxidative stress and promoting TFEB function.
    Sci Transl Med. 2012 Jul 11;4(142):142ra97 PMID: 22786682
  31. PGC-1 coactivators: inducible regulators of energy metabolism in health and disease.
    J Clin Invest. 2006 Mar;116(3):615-22 PMID: 16511594
  32. Autophagy in the cellular energetic balance.
    Cell Metab. 2011 May 4;13(5):495-504 PMID: 21531332
  33. Lifespan extension in Caenorhabditis elegans by complete removal of food.
    Aging Cell. 2006 Dec;5(6):487-94 PMID: 17081160
  34. Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics.
    Genome Res. 2000 May;10(5):703-13 PMID: 10810093
  35. Transcriptional autoregulatory loops are highly conserved in vertebrate evolution.
    PLoS One. 2008 Sep 15;3(9):e3210 PMID: 18791639
  36. SIRT1 transgenic mice show phenotypes resembling calorie restriction.
    Aging Cell. 2007 Dec;6(6):759-67 PMID: 17877786
  37. Hepatic fibroblast growth factor 21 is regulated by PPARalpha and is a key mediator of hepatic lipid metabolism in ketotic states.
    Cell Metab. 2007 Jun;5(6):426-37 PMID: 17550778
  38. Leptin activation of Stat3 in the hypothalamus of wild-type and ob/ob mice but not db/db mice.
    Nat Genet. 1996 Sep;14(1):95-7 PMID: 8782827
  39. TFEB links autophagy to lysosomal biogenesis.
    Science. 2011 Jun 17;332(6036):1429-33 PMID: 21617040
Article Info
Journal
Nature cell biology
Abbr.
Nat Cell Biol
ISSN
1476-4679
Published
2013-06-00
Epub
2013-00-21
Pages
647-58
Language
English
Region
England
NLM ID
100890575
PMCID
PMC3699877
Subset
IM
Grants
NINDS NIH HHS · R01 NS078072 · United States
NHLBI NIH HHS · R01 HL051586 · United States
NIDDK NIH HHS · P30 DK043351 · United States
NIDDK NIH HHS · P30-DK079638 · United States
NINDS NIH HHS · R01-NS078072 · United States
NIGMS NIH HHS · R01 GM101056 · United States
NHLBI NIH HHS · R01-HL51586 · United States
Telethon · TGM11CB6 · Italy
Telethon · TGM11SB1 · Italy
NIGMS NIH HHS · R01GM101056-01 · United States
NIDDK NIH HHS · P30 DK079638 · United States
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