-
Testing for ancient admixture between closely related populations.
Mol Biol Evol. 2011 Aug;28(8):2239-52
PMID: 21325092
-
Demographic inference using spectral methods on SNP data, with an analysis of the human out-of-Africa expansion.
Genetics. 2012 Oct;192(2):619-39
PMID: 22865734
-
Distinguishing migration from isolation: a Markov chain Monte Carlo approach.
Genetics. 2001 Jun;158(2):885-96
PMID: 11404349
-
Dating the age of admixture via wavelet transform analysis of genome-wide data.
Genome Biol. 2011;12(2):R19
PMID: 21352535
-
A draft sequence of the Neandertal genome.
Science. 2010 May 7;328(5979):710-722
PMID: 20448178
-
The genomic basis of adaptive evolution in threespine sticklebacks.
Nature. 2012 Apr 04;484(7392):55-61
PMID: 22481358
-
The power and promise of population genomics: from genotyping to genome typing.
Nat Rev Genet. 2003 Dec;4(12):981-94
PMID: 14631358
-
Linkage disequilibrium, gene trees and selfing: an ancestral recombination graph with partial self-fertilization.
Genetics. 2000 Feb;154(2):923-9
PMID: 10655241
-
Ancestral inference from samples of DNA sequences with recombination.
J Comput Biol. 1996 Winter;3(4):479-502
PMID: 9018600
-
A likelihood-based comparison of population histories in a parasitoid guild.
Mol Ecol. 2012 Sep;21(18):4605-17
PMID: 22891657
-
Population genetics models of local ancestry.
Genetics. 2012 Jun;191(2):607-19
PMID: 22491189
-
Haplotype phasing: existing methods and new developments.
Nat Rev Genet. 2011 Sep 16;12(10):703-14
PMID: 21921926
-
An accurate sequentially Markov conditional sampling distribution for the coalescent with recombination.
Genetics. 2011 Apr;187(4):1115-28
PMID: 21270390
-
Coalescent genealogy samplers: windows into population history.
Trends Ecol Evol. 2009 Feb;24(2):86-93
PMID: 19101058
-
A map of human genome variation from population-scale sequencing.
Nature. 2010 Oct 28;467(7319):1061-73
PMID: 20981092
-
Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis.
Genetics. 2004 Jun;167(2):747-60
PMID: 15238526
-
The Bayesian revolution in genetics.
Nat Rev Genet. 2004 Apr;5(4):251-61
PMID: 15131649
-
Genetics in geographically structured populations: defining, estimating and interpreting F(ST).
Nat Rev Genet. 2009 Sep;10(9):639-50
PMID: 19687804
-
Maximum-likelihood estimation of demographic parameters using the frequency spectrum of unlinked single-nucleotide polymorphisms.
Genetics. 2004 Nov;168(3):1699-712
PMID: 15579718
-
Evolution in Mendelian Populations.
Genetics. 1931 Mar;16(2):97-159
PMID: 17246615
-
A fine-scale map of recombination rates and hotspots across the human genome.
Science. 2005 Oct 14;310(5746):321-4
PMID: 16224025
-
Bayesian inference of ancient human demography from individual genome sequences.
Nat Genet. 2011 Sep 18;43(10):1031-4
PMID: 21926973
-
Population genetic analysis of ascertained SNP data.
Hum Genomics. 2004 Mar;1(3):218-24
PMID: 15588481
-
Two-locus sampling distributions and their application.
Genetics. 2001 Dec;159(4):1805-17
PMID: 11779816
-
Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model.
PLoS Genet. 2007 Feb 23;3(2):e7
PMID: 17319744
-
Sequencing technologies - the next generation.
Nat Rev Genet. 2010 Jan;11(1):31-46
PMID: 19997069
-
The date of interbreeding between Neandertals and modern humans.
PLoS Genet. 2012;8(10):e1002947
PMID: 23055938
-
Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics.
Proc Natl Acad Sci U S A. 2007 Feb 20;104(8):2785-90
PMID: 17301231
-
Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African hunter-gatherers.
Cell. 2012 Aug 3;150(3):457-69
PMID: 22840920
-
Genotype and SNP calling from next-generation sequencing data.
Nat Rev Genet. 2011 Jun;12(6):443-51
PMID: 21587300
-
Maximum likelihood estimation of recombination rates from population data.
Genetics. 2000 Nov;156(3):1393-401
PMID: 11063710
-
Darwin's bridge between microevolution and macroevolution.
Nature. 2009 Feb 12;457(7231):837-42
PMID: 19212402
-
Inference of historical changes in migration rate from the lengths of migrant tracts.
Genetics. 2009 Feb;181(2):711-9
PMID: 19087958
-
A general method for calculating likelihoods under the coalescent process.
Genetics. 2011 Nov;189(3):977-87
PMID: 21900266
-
Simultaneous inference of selection and population growth from patterns of variation in the human genome.
Proc Natl Acad Sci U S A. 2005 May 31;102(22):7882-7
PMID: 15905331
-
Analysis of linkage disequilibrium in an island model.
Theor Popul Biol. 1986 Apr;29(2):161-97
PMID: 3715765
-
Phylogenies from molecular sequences: inference and reliability.
Annu Rev Genet. 1988;22:521-65
PMID: 3071258
-
A sequentially Markov conditional sampling distribution for structured populations with migration and recombination.
Theor Popul Biol. 2013 Aug;87:51-61
PMID: 23010245
-
Unified framework to evaluate panmixia and migration direction among multiple sampling locations.
Genetics. 2010 May;185(1):313-26
PMID: 20176979
-
Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data.
PLoS Genet. 2009 Oct;5(10):e1000695
PMID: 19851460
-
Recombination as a point process along sequences.
Theor Popul Biol. 1999 Jun;55(3):248-59
PMID: 10366550
-
Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication.
Nature. 2010 Apr 8;464(7290):898-902
PMID: 20237475
-
A coalescent-based method for detecting and estimating recombination from gene sequences.
Genetics. 2002 Mar;160(3):1231-41
PMID: 11901136
-
Linkage disequilibrium--understanding the evolutionary past and mapping the medical future.
Nat Rev Genet. 2008 Jun;9(6):477-85
PMID: 18427557
-
INTERSPECIFIC HYBRIDIZATION, HETEROZYGOSITY AND GENE EXCHANGE IN PHLOX.
Evolution. 1975 Mar;29(1):37-51
PMID: 28563279
-
Evolutionary relationship of DNA sequences in finite populations.
Genetics. 1983 Oct;105(2):437-60
PMID: 6628982
-
Modern computational approaches for analysing molecular genetic variation data.
Nat Rev Genet. 2006 Oct;7(10):759-70
PMID: 16983372
-
Theory and speciation.
Trends Ecol Evol. 2001 Jul 1;16(7):330-343
PMID: 11403865
-
Demographic history and rare allele sharing among human populations.
Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):11983-8
PMID: 21730125
-
Comparative and demographic analysis of orang-utan genomes.
Nature. 2011 Jan 27;469(7331):529-33
PMID: 21270892
-
Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data.
Genetics. 2003 Dec;165(4):2213-33
PMID: 14704198
-
Linkage disequilibrium: what history has to tell us.
Trends Genet. 2002 Feb;18(2):83-90
PMID: 11818140
-
Genome-wide genetic marker discovery and genotyping using next-generation sequencing.
Nat Rev Genet. 2011 Jun 17;12(7):499-510
PMID: 21681211
-
fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios.
Bioinformatics. 2011 May 1;27(9):1332-4
PMID: 21398675
-
The sequence and de novo assembly of the giant panda genome.
Nature. 2010 Jan 21;463(7279):311-7
PMID: 20010809
-
Genetic history of an archaic hominin group from Denisova Cave in Siberia.
Nature. 2010 Dec 23;468(7327):1053-60
PMID: 21179161
-
Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags.
PLoS Genet. 2010 Feb 26;6(2):e1000862
PMID: 20195501
-
Properties of a neutral allele model with intragenic recombination.
Theor Popul Biol. 1983 Apr;23(2):183-201
PMID: 6612631
-
Estimation of population parameters and recombination rates from single nucleotide polymorphisms.
Genetics. 2000 Feb;154(2):931-42
PMID: 10655242
-
Can one learn history from the allelic spectrum?
Theor Popul Biol. 2008 May;73(3):342-8
PMID: 18321552
-
Identity by descent between distant relatives: detection and applications.
Annu Rev Genet. 2012;46:617-33
PMID: 22994355
-
Molecular signatures of natural selection.
Annu Rev Genet. 2005;39:197-218
PMID: 16285858
-
Widespread genomic divergence during sympatric speciation.
Proc Natl Acad Sci U S A. 2010 May 25;107(21):9724-9
PMID: 20457907
-
The potential and challenges of nanopore sequencing.
Nat Biotechnol. 2008 Oct;26(10):1146-53
PMID: 18846088
-
The role of hybridization in evolution.
Mol Ecol. 2001 Mar;10(3):551-68
PMID: 11298968
-
The evolutionary genetics of speciation.
Philos Trans R Soc Lond B Biol Sci. 1998 Feb 28;353(1366):287-305
PMID: 9533126
-
Ascertainment bias in estimates of average heterozygosity.
Am J Hum Genet. 1996 May;58(5):1033-41
PMID: 8651264
-
Non-equilibrium allele frequency spectra via spectral methods.
Theor Popul Biol. 2011 Jun;79(4):203-19
PMID: 21376069
-
Gene flow and natural selection in the origin of Drosophila pseudoobscura and close relatives.
Genetics. 1997 Nov;147(3):1091-106
PMID: 9383055
-
Estimating divergence parameters with small samples from a large number of loci.
Genetics. 2010 Feb;184(2):363-79
PMID: 19917765
-
SOLUTION OF A PROCESS OF RANDOM GENETIC DRIFT WITH A CONTINUOUS MODEL.
Proc Natl Acad Sci U S A. 1955 Mar 15;41(3):144-50
PMID: 16589632
-
The ancestry of a sample of sequences subject to recombination.
Genetics. 1999 Mar;151(3):1217-28
PMID: 10049937
-
Estimating divergence time and ancestral effective population size of Bornean and Sumatran orangutan subspecies using a coalescent hidden Markov model.
PLoS Genet. 2011 Mar;7(3):e1001319
PMID: 21408205
-
Bayesian inference of fine-scale recombination rates using population genomic data.
Philos Trans R Soc Lond B Biol Sci. 2008 Dec 27;363(1512):3921-30
PMID: 18852101
-
Population genetic inference from genomic sequence variation.
Genome Res. 2010 Mar;20(3):291-300
PMID: 20067940
-
Sympatric speciation in animals: the ugly duckling grows up.
Trends Ecol Evol. 2001 Jul 1;16(7):381-390
PMID: 11403871
-
Adaptation genomics: the next generation.
Trends Ecol Evol. 2010 Dec;25(12):705-12
PMID: 20952088
-
Inference of human population history from individual whole-genome sequences.
Nature. 2011 Jul 13;475(7357):493-6
PMID: 21753753
-
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species.
Nature. 2012 Jul 5;487(7405):94-8
PMID: 22722851
-
The hitch-hiking effect of a favourable gene.
Genet Res. 1974 Feb;23(1):23-35
PMID: 4407212
-
Recombination and speciation.
Mol Ecol. 2005 Aug;14(9):2621-35
PMID: 16029465
-
Statistical inferences in phylogeography.
Mol Ecol. 2009 Mar;18(6):1034-47
PMID: 19207258
-
Stepwise mutation likelihood computation by sequential importance sampling in subdivided population models.
Theor Popul Biol. 2005 Jul;68(1):41-53
PMID: 15890376