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PMID: 23749958 Published · ppublish English Journal Article Research Support, N.I.H., Extramural

PurBayes: estimating tumor cellularity and subclonality in next-generation sequencing data.

Bioinformatics (Oxford, England) ·Vol. 29 ·No. 15 ·2013-08-01 ·Pages 1888-9

Larson NB, Fridley BL

Abstract

We have developed a novel Bayesian method, PurBayes, to estimate tumor purity and detect intratumor heterogeneity based on next-generation sequencing data of paired tumor-normal tissue samples, which uses finite mixture modeling methods. We demonstrate our approach using simulated data and discuss its performance under varying conditions. PurBayes is implemented as an R package, and source code is available for download through CRAN at http://cran.r-project.org/package=PurBayes. [email protected] Supplementary data are available online at Bioinformatics online.

MeSH Terms
Bayes Theorem Genetic Variation High-Throughput Nucleotide Sequencing Humans Neoplasms/genetics Software
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Larson Nicholas B
Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN 55901, USA. [email protected]
Fridley Brooke L
References (7)
7 references, click to expand
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Article Info
Journal
Bioinformatics (Oxford, England)
Abbr.
Bioinformatics
ISSN
1367-4811
Published
2013-08-01
Epub
2013-00-06
Pages
1888-9
Language
English
Region
England
NLM ID
9808944
PMCID
PMC3712213
Subset
IM
Grants
NIGMS NIH HHS · P20 GM103418 · United States
NCI NIH HHS · P30 CA168524 · United States
NIGMS NIH HHS · R21 GM086689 · United States
NIGMS NIH HHS · R21 GM86689 · United States
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