-
Tumor self-seeding by circulating cancer cells.
Cell. 2009 Dec 24;139(7):1315-26
PMID: 20064377
-
Critical determinants of metastasis.
Semin Cancer Biol. 2002 Apr;12(2):89-96
PMID: 12027580
-
An improved single-cell cDNA amplification method for efficient high-density oligonucleotide microarray analysis.
Nucleic Acids Res. 2006 Mar 17;34(5):e42
PMID: 16547197
-
The life history of 21 breast cancers.
Cell. 2012 May 25;149(5):994-1007
PMID: 22608083
-
Tracking epigenetic histone modifications in single cells using Fab-based live endogenous modification labeling.
Nucleic Acids Res. 2011 Aug;39(15):6475-88
PMID: 21576221
-
Post-embryonic cell lineages of the nematode, Caenorhabditis elegans.
Dev Biol. 1977 Mar;56(1):110-56
PMID: 838129
-
Extensive somatic microsatellite mutations in normal human tissue.
Cancer Res. 2001 Jun 1;61(11):4541-4
PMID: 11389087
-
Methylation reveals a niche: stem cell succession in human colon crypts.
Oncogene. 2002 Aug 12;21(35):5441-9
PMID: 12154406
-
Robust 4C-seq data analysis to screen for regulatory DNA interactions.
Nat Methods. 2012 Oct;9(10):969-72
PMID: 22961246
-
Single-cell dissection of transcriptional heterogeneity in human colon tumors.
Nat Biotechnol. 2011 Nov 13;29(12):1120-7
PMID: 22081019
-
Counting absolute numbers of molecules using unique molecular identifiers.
Nat Methods. 2011 Nov 20;9(1):72-4
PMID: 22101854
-
Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes.
Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1347-52
PMID: 22232676
-
Amplification of multiple genomic loci from single cells isolated by laser micro-dissection of tissues.
BMC Biotechnol. 2008 Feb 20;8:17
PMID: 18284708
-
Single-cell proteomic chip for profiling intracellular signaling pathways in single tumor cells.
Proc Natl Acad Sci U S A. 2012 Jan 10;109(2):419-24
PMID: 22203961
-
Multiplexed protein detection by proximity ligation for cancer biomarker validation.
Nat Methods. 2007 Apr;4(4):327-9
PMID: 17369836
-
Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Science. 2009 Oct 9;326(5950):289-93
PMID: 19815776
-
Droplet microfluidics for high-throughput biological assays.
Lab Chip. 2012 Jun 21;12(12):2146-55
PMID: 22318506
-
Perspectives and challenges of emerging single-molecule DNA sequencing technologies.
Small. 2009 Dec;5(23):2638-49
PMID: 19904762
-
Genome-wide detection of single-nucleotide and copy-number variations of a single human cell.
Science. 2012 Dec 21;338(6114):1622-6
PMID: 23258894
-
Direct, genome-wide assessment of DNA mutations in single cells.
Nucleic Acids Res. 2012 Mar;40(5):2032-40
PMID: 22086961
-
Cell lineage analysis of the mammalian female germline.
PLoS Genet. 2012;8(2):e1002477
PMID: 22383887
-
An integrated map of genetic variation from 1,092 human genomes.
Nature. 2012 Nov 1;491(7422):56-65
PMID: 23128226
-
CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification.
Cell Rep. 2012 Sep 27;2(3):666-73
PMID: 22939981
-
Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq.
Genome Res. 2011 Jul;21(7):1160-7
PMID: 21543516
-
Somatic mutation profiles of MSI and MSS colorectal cancer identified by whole exome next generation sequencing and bioinformatics analysis.
PLoS One. 2010 Dec 22;5(12):e15661
PMID: 21203531
-
Target for cancer therapy: proliferating cells or stem cells.
Leukemia. 2006 Mar;20(3):385-91
PMID: 16357832
-
Evolution of the cancer genome.
Nat Rev Genet. 2012 Nov;13(11):795-806
PMID: 23044827
-
Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study.
Lancet Infect Dis. 2013 Feb;13(2):137-46
PMID: 23158499
-
A first step towards practical single cell proteomics: a microfluidic antibody capture chip with TIRF detection.
Lab Chip. 2011 Apr 7;11(7):1256-61
PMID: 21347466
-
Targeted capture and massively parallel sequencing of 12 human exomes.
Nature. 2009 Sep 10;461(7261):272-6
PMID: 19684571
-
Inferring clonal expansion and cancer stem cell dynamics from DNA methylation patterns in colorectal cancers.
Proc Natl Acad Sci U S A. 2009 Mar 24;106(12):4828-33
PMID: 19261858
-
Direct RNA sequencing.
Nature. 2009 Oct 8;461(7265):814-8
PMID: 19776739
-
Comprehensive mutation analysis for congenital muscular dystrophy: a clinical PCR-based enrichment and next-generation sequencing panel.
PLoS One. 2013;8(1):e53083
PMID: 23326386
-
Investigating stem cells in human colon by using methylation patterns.
Proc Natl Acad Sci U S A. 2001 Sep 11;98(19):10839-44
PMID: 11517339
-
Repeatedly identified differentially expressed proteins (RIDEPs) from antibody microarray proteomic analysis.
J Proteomics. 2011 May 1;74(5):698-703
PMID: 21338725
-
Fate mapping reveals origins and dynamics of monocytes and tissue macrophages under homeostasis.
Immunity. 2013 Jan 24;38(1):79-91
PMID: 23273845
-
V(D)J recombination: mechanisms of initiation.
Annu Rev Genet. 2011;45:167-202
PMID: 21854230
-
Accurate whole-genome sequencing and haplotyping from 10 to 20 human cells.
Nature. 2012 Jul 11;487(7406):190-5
PMID: 22785314
-
A Melanoma Brain Metastasis with a Donor-Patient Hybrid Genome following Bone Marrow Transplantation: First Evidence for Fusion in Human Cancer.
PLoS One. 2013 Jun 26;8(6):e66731
PMID: 23840523
-
Analysis of gene expression in single live neurons.
Proc Natl Acad Sci U S A. 1992 Apr 1;89(7):3010-4
PMID: 1557406
-
Counting individual DNA molecules by the stochastic attachment of diverse labels.
Proc Natl Acad Sci U S A. 2011 May 31;108(22):9026-31
PMID: 21562209
-
Mutational processes molding the genomes of 21 breast cancers.
Cell. 2012 May 25;149(5):979-93
PMID: 22608084
-
Central dogma at the single-molecule level in living cells.
Nature. 2011 Jul 20;475(7356):308-15
PMID: 21776076
-
In vivo control of CpG and non-CpG DNA methylation by DNA methyltransferases.
PLoS Genet. 2012 Jun;8(6):e1002750
PMID: 22761581
-
ProteinSeq: high-performance proteomic analyses by proximity ligation and next generation sequencing.
PLoS One. 2011;6(9):e25583
PMID: 21980495
-
Real-time single-molecule co-immunoprecipitation analyses reveal cancer-specific Ras signalling dynamics.
Nat Commun. 2013;4:1505
PMID: 23422673
-
Detection and quantification of rare mutations with massively parallel sequencing.
Proc Natl Acad Sci U S A. 2011 Jun 7;108(23):9530-5
PMID: 21586637
-
Fusion of tumour cells with bone marrow-derived cells: a unifying explanation for metastasis.
Nat Rev Cancer. 2008 May;8(5):377-86
PMID: 18385683
-
Cell lineage analysis of acute leukemia relapse uncovers the role of replication-rate heterogeneity and microsatellite instability.
Blood. 2012 Jul 19;120(3):603-12
PMID: 22645183
-
Genetic variegation of clonal architecture and propagating cells in leukaemia.
Nature. 2011 Jan 20;469(7330):356-61
PMID: 21160474
-
Mitochondrial variability as a source of extrinsic cellular noise.
PLoS Comput Biol. 2012;8(3):e1002416
PMID: 22412363
-
Clonal evolution of preleukemic hematopoietic stem cells precedes human acute myeloid leukemia.
Sci Transl Med. 2012 Aug 29;4(149):149ra118
PMID: 22932223
-
Intratumor heterogeneity and branched evolution revealed by multiregion sequencing.
N Engl J Med. 2012 Mar 8;366(10):883-892
PMID: 22397650
-
Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data.
Nucleic Acids Res. 2008 Sep;36(16):5221-31
PMID: 18684996
-
Whole genome amplification from single cells in preimplantation genetic diagnosis and prenatal diagnosis.
Eur J Obstet Gynecol Reprod Biol. 2007 Mar;131(1):13-20
PMID: 17157976
-
The embryonic cell lineage of the nematode Caenorhabditis elegans.
Dev Biol. 1983 Nov;100(1):64-119
PMID: 6684600
-
Epigenetic polymorphism and the stochastic formation of differentially methylated regions in normal and cancerous tissues.
Nat Genet. 2012 Nov;44(11):1207-14
PMID: 23064413
-
Single oocyte bisulfite mutagenesis.
J Vis Exp. 2012 Jun 27;(64):
PMID: 22782232
-
Use of somatic mutations to quantify random contributions to mouse development.
BMC Genomics. 2013 Jan 18;14:39
PMID: 23327737
-
Alternative isoform regulation in human tissue transcriptomes.
Nature. 2008 Nov 27;456(7221):470-6
PMID: 18978772
-
Targeted resequencing of candidate genes using selector probes.
Nucleic Acids Res. 2011 Jan;39(2):e8
PMID: 21059679
-
The therapeutic promise of the cancer stem cell concept.
J Clin Invest. 2010 Jan;120(1):41-50
PMID: 20051635
-
A method for counting PCR template molecules with application to next-generation sequencing.
Nucleic Acids Res. 2011 Jul;39(12):e81
PMID: 21490082
-
Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling.
Nat Protoc. 2011 Apr;6(4):468-81
PMID: 21412275
-
Detecting antigens by quantitative immuno-PCR.
Nat Protoc. 2007;2(8):1918-30
PMID: 17703203
-
Human cell type diversity, evolution, development, and classification with special reference to cells derived from the neural crest.
Biol Rev Camb Philos Soc. 2006 Aug;81(3):425-55
PMID: 16790079
-
The future is now: single-cell genomics of bacteria and archaea.
FEMS Microbiol Rev. 2013 May;37(3):407-27
PMID: 23298390
-
Monitoring the dynamics of primary T cell activation and differentiation using long term live cell imaging in microwell arrays.
Lab Chip. 2012 Dec 7;12(23):5007-15
PMID: 23072772
-
Stem cell transcriptome profiling via massive-scale mRNA sequencing.
Nat Methods. 2008 Jul;5(7):613-9
PMID: 18516046
-
Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.
Nat Biotechnol. 2012 Aug;30(8):777-82
PMID: 22820318
-
Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing.
Cancer Res. 2007 Sep 15;67(18):8511-8
PMID: 17875690
-
Adult neurogenesis in the mammalian brain: significant answers and significant questions.
Neuron. 2011 May 26;70(4):687-702
PMID: 21609825
-
Exome sequencing: the sweet spot before whole genomes.
Hum Mol Genet. 2010 Oct 15;19(R2):R145-51
PMID: 20705737
-
Molecular cloning, by a novel approach, of a cDNA encoding a putative olfactory protein in the labial palps of the moth Cactoblastis cactorum.
Gene. 1997 Nov 20;202(1-2):39-43
PMID: 9427543
-
Circulating tumor cells: a novel prognostic factor for newly diagnosed metastatic breast cancer.
J Clin Oncol. 2005 Mar 1;23(7):1420-30
PMID: 15735118
-
The stem cell population of the human colon crypt: analysis via methylation patterns.
PLoS Comput Biol. 2007 Mar 2;3(3):e28
PMID: 17335343
-
Whole-Genome Amplification by Improved Primer Extension Preamplification PCR (I-PEP-PCR).
CSH Protoc. 2008 Jan 01;2008:pdb.prot4921
PMID: 21356675
-
Multiplex padlock targeted sequencing reveals human hypermutable CpG variations.
Genome Res. 2009 Sep;19(9):1606-15
PMID: 19525355
-
Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm.
Cell. 2012 Mar 2;148(5):873-85
PMID: 22385957
-
The transcriptional landscape of the yeast genome defined by RNA sequencing.
Science. 2008 Jun 6;320(5881):1344-9
PMID: 18451266
-
Comparative genomic hybridization, loss of heterozygosity, and DNA sequence analysis of single cells.
Proc Natl Acad Sci U S A. 1999 Apr 13;96(8):4494-9
PMID: 10200290
-
Microfluidic amplification as a tool for massive parallel sequencing of the familial hypercholesterolemia genes.
Clin Chem. 2012 Apr;58(4):717-24
PMID: 22294733
-
Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm.
Cell. 2012 Jul 20;150(2):402-12
PMID: 22817899
-
Colorectal adenoma and cancer divergence. Evidence of multilineage progression.
Am J Pathol. 1999 Jun;154(6):1815-24
PMID: 10362806
-
Identity crisis for adult periventricular neural stem cells: subventricular zone astrocytes, ependymal cells or both?
Nat Rev Neurosci. 2009 Feb;10(2):153-63
PMID: 19153578
-
Genome-wide copy number analysis of single cells.
Nat Protoc. 2012 May 03;7(6):1024-41
PMID: 22555242
-
Lineage tracing reveals Lgr5+ stem cell activity in mouse intestinal adenomas.
Science. 2012 Aug 10;337(6095):730-5
PMID: 22855427
-
Automated analysis of embryonic gene expression with cellular resolution in C. elegans.
Nat Methods. 2008 Aug;5(8):703-9
PMID: 18587405
-
Metastasis results from preexisting variant cells within a malignant tumor.
Science. 1977 Aug 26;197(4306):893-5
PMID: 887927
-
Phylogenetic fate mapping.
Proc Natl Acad Sci U S A. 2006 Apr 4;103(14):5448-53
PMID: 16569691
-
Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum.
Science. 2011 May 6;332(6030):687-96
PMID: 21551058
-
Maintenance of β-cell maturity and plasticity in the adult pancreas: developmental biology concepts in adult physiology.
Diabetes. 2012 Jun;61(6):1365-71
PMID: 22618775
-
Genetic reconstruction of individual colorectal tumor histories.
Proc Natl Acad Sci U S A. 2000 Feb 1;97(3):1236-41
PMID: 10655514
-
Single-molecule DNA sequencing of a viral genome.
Science. 2008 Apr 4;320(5872):106-9
PMID: 18388294
-
Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing.
Science. 2012 Dec 21;338(6114):1627-30
PMID: 23258895
-
Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA.
Proc Natl Acad Sci U S A. 1996 Dec 10;93(25):14676-9
PMID: 8962113
-
Cortical neurons arise in symmetric and asymmetric division zones and migrate through specific phases.
Nat Neurosci. 2004 Feb;7(2):136-44
PMID: 14703572
-
Development and optimization of a process for automated recovery of single cells identified by microengraving.
Biotechnol Prog. 2010 May-Jun;26(3):888-95
PMID: 20063389
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq.
Nat Methods. 2008 Jul;5(7):621-8
PMID: 18516045
-
Nature, nurture, or chance: stochastic gene expression and its consequences.
Cell. 2008 Oct 17;135(2):216-26
PMID: 18957198
-
Tumour evolution inferred by single-cell sequencing.
Nature. 2011 Apr 7;472(7341):90-4
PMID: 21399628
-
The evolution of cell types in animals: emerging principles from molecular studies.
Nat Rev Genet. 2008 Nov;9(11):868-82
PMID: 18927580
-
Multidimensional regulation of gene expression in the C. elegans embryo.
Genome Res. 2012 Jul;22(7):1282-94
PMID: 22508763
-
Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor.
Cell. 2012 Mar 2;148(5):886-95
PMID: 22385958
-
Characterizing and measuring bias in sequence data.
Genome Biol. 2013 May 29;14(5):R51
PMID: 23718773
-
Microfluidic single cell analysis: from promise to practice.
Curr Opin Chem Biol. 2012 Aug;16(3-4):381-90
PMID: 22525493
-
Targeted genomic sequencing of pediatric Burkitt lymphoma identifies recurrent alterations in antiapoptotic and chromatin-remodeling genes.
Blood. 2012 Dec 20;120(26):5181-4
PMID: 23091298
-
Whole-exome sequencing efficiently detects rare mutations in autosomal recessive nonsyndromic hearing loss.
PLoS One. 2012;7(11):e50628
PMID: 23226338
-
Decoding cell lineage from acquired mutations using arbitrary deep sequencing.
Nat Methods. 2011 Nov 27;9(1):78-80
PMID: 22120468
-
Microdroplet-based PCR enrichment for large-scale targeted sequencing.
Nat Biotechnol. 2009 Nov;27(11):1025-31
PMID: 19881494
-
Comprehensive human genome amplification using multiple displacement amplification.
Proc Natl Acad Sci U S A. 2002 Apr 16;99(8):5261-6
PMID: 11959976
-
A window into third-generation sequencing.
Hum Mol Genet. 2010 Oct 15;19(R2):R227-40
PMID: 20858600
-
Initial sequencing and analysis of the human genome.
Nature. 2001 Feb 15;409(6822):860-921
PMID: 11237011
-
High-throughput sequencing of the paired human immunoglobulin heavy and light chain repertoire.
Nat Biotechnol. 2013 Feb;31(2):166-9
PMID: 23334449
-
Muscle-bound primordial stem cells give rise to myofiber-associated myogenic and non-myogenic progenitors.
PLoS One. 2011;6(10):e25605
PMID: 22022423
-
Visualization of omics data for systems biology.
Nat Methods. 2010 Mar;7(3 Suppl):S56-68
PMID: 20195258
-
Optical tweezers for single cells.
J R Soc Interface. 2008 Jul 6;5(24):671-90
PMID: 18381254
-
Microsatellites: simple sequences with complex evolution.
Nat Rev Genet. 2004 Jun;5(6):435-45
PMID: 15153996
-
Genomic analysis at the single-cell level.
Annu Rev Genet. 2011;45:431-45
PMID: 21942365
-
Phylogenetic analysis of developmental and postnatal mouse cell lineages.
Evol Dev. 2010 Jan-Feb;12(1):84-94
PMID: 20156285
-
Global single-cell cDNA amplification to provide a template for representative high-density oligonucleotide microarray analysis.
Nat Protoc. 2007;2(3):739-52
PMID: 17406636
-
Laser capture microdissection of fluorescently labeled embryonic cranial neural crest cells.
Genesis. 2004 May;39(1):58-64
PMID: 15124228
-
Capturing chromosome conformation.
Science. 2002 Feb 15;295(5558):1306-11
PMID: 11847345
-
Whole-genome molecular haplotyping of single cells.
Nat Biotechnol. 2011 Jan;29(1):51-7
PMID: 21170043
-
A high-throughput DNA methylation analysis of a single cell.
Nucleic Acids Res. 2011 Apr;39(7):e44
PMID: 21266484
-
Reconstruction of cell lineage trees in mice.
PLoS One. 2008 Apr 09;3(4):e1939
PMID: 18398465
-
Colon stem cell and crypt dynamics exposed by cell lineage reconstruction.
PLoS Genet. 2011 Jul;7(7):e1002192
PMID: 21829376
-
Estimating cell depth from somatic mutations.
PLoS Comput Biol. 2008 May 09;4(4):e1000058
PMID: 18404205
-
Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity.
Genome Biol. 2013 Apr 17;14(4):R31
PMID: 23594475
-
Distant metastasis occurs late during the genetic evolution of pancreatic cancer.
Nature. 2010 Oct 28;467(7319):1114-7
PMID: 20981102
-
Library-free methylation sequencing with bisulfite padlock probes.
Nat Methods. 2012 Feb 05;9(3):270-2
PMID: 22306810
-
Molecular live cell bioimaging in stem cell research.
Ann N Y Acad Sci. 2012 Aug;1266:18-27
PMID: 22901252
-
High-throughput microfluidic single-cell RT-qPCR.
Proc Natl Acad Sci U S A. 2011 Aug 23;108(34):13999-4004
PMID: 21808033
-
Toward clinical proteomics on a next-generation sequencing platform.
Anal Chem. 2011 Feb 1;83(3):666-70
PMID: 21142014
-
Quantification of cardiovascular biomarkers in patient plasma by targeted mass spectrometry and stable isotope dilution.
Mol Cell Proteomics. 2009 Oct;8(10):2339-49
PMID: 19596694
-
Cancer stem cells: Here, there, everywhere?
Nature. 2008 Dec 4;456(7222):581-2
PMID: 19052611
-
Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing.
Nature. 2012 Jan 11;481(7382):506-10
PMID: 22237025
-
Probing cellular protein complexes using single-molecule pull-down.
Nature. 2011 May 26;473(7348):484-8
PMID: 21614075
-
mRNA-Seq whole-transcriptome analysis of a single cell.
Nat Methods. 2009 May;6(5):377-82
PMID: 19349980
-
Real-time DNA sequencing from single polymerase molecules.
Science. 2009 Jan 2;323(5910):133-8
PMID: 19023044