Home LiteratureArticle Details
PMID: 2434951 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Site-directed mutagenesis of the COOH-terminal region of colicin A: effect on secretion and voltage-dependent channel activity.

Baty D, Knibiehler M, Verheij H, Pattus F, Shire D, Bernadac A, Lazdunski C

Abstract

A large number of mutants introducing point mutations and deletions into the COOH-terminal domain of colicin A have been constructed by using site-directed mutagenesis. The COOH-terminal domain carries the channel activity. The effects of the alterations in the polypeptide chain on the secretion of colicin A by colicinogenic cells have been investigated. All deletions and some mutations were found to lead to protein aggregation in the cytoplasm, thereby preventing release into the medium. The mutated colicin A proteins have been purified, and their activity in vivo (on sensitive cells) and in vitro (in planar lipid bilayers) has been assayed. Deletions in the region containing putative helices 4, 5, and 6 (predicted to be involved in pore formation) and the transitions (Ala----Asp-492, Phe----Pro-493) in helix 4 abolished the activity. No correlation was observed between mutations leading to protein aggregation and those leading to loss of channel activity. Some mutations were found to alter characteristic properties of the single channels, such as stability, current-relaxation kinetics, voltage dependence, and pore conductance. Site-directed mutagenesis provides a powerful tool for studying structure-function relationships of voltage-sensitive ionic channels.

MeSH Terms
Amino Acid Sequence Base Sequence Colicins/genetics,metabolism,pharmacology Escherichia coli/drug effects,genetics Ion Channels/drug effects,physiology Lipid Bilayers Microscopy, Electron Mutation Oligodeoxyribonucleotides/pharmacology
Chemicals
Colicins Ion Channels Lipid Bilayers Oligodeoxyribonucleotides
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Baty D
Knibiehler M
Verheij H
Pattus F
Shire D
Bernadac A
Lazdunski C
References (27)
27 references, click to expand
  1. Mechanism of export of colicin E1 and colicin E3.
    J Bacteriol. 1979 Jun;138(3):770-8 PMID: 378936
  2. Crystallization of the C-terminal domain of colicin A carrying the voltage-dependent pore activity of the protein.
    J Mol Biol. 1986 Jul 5;190(1):133-4 PMID: 3783697
  3. The nucleotide sequence surrounding the promoter region of colicin E1 gene.
    Gene. 1981 Nov;15(2-3):119-26 PMID: 6271636
  4. Protein H encoded by plasmid Clo DF13 involved in lysis of the bacterial host. II. Functions and regulation of synthesis of the gene H product.
    Mol Gen Genet. 1981;183(2):326-32 PMID: 7035830
  5. Exclusive localization of colicin A in cell cytoplasm of producing bacteria.
    Eur J Biochem. 1981 Sep;119(1):125-31 PMID: 7042335
  6. Isolation, molecular and functional properties of the C-terminal domain of colicin A.
    EMBO J. 1983;2(9):1501-7 PMID: 11892802
  7. Colicin K acts by forming voltage-dependent channels in phospholipid bilayer membranes.
    Nature. 1978 Nov 9;276(5684):159-63 PMID: 740032
  8. Efficient site-directed mutagenesis by simultaneous use of two primers.
    Nucleic Acids Res. 1983 Aug 11;11(15):5103-12 PMID: 6308572
  9. Expression of a gene in a 400-base-pair fragment of colicin plasmid ColE2-P9 is sufficient to cause host cell lysis.
    J Bacteriol. 1983 Oct;156(1):109-14 PMID: 6352670
  10. Oligonucleotide-directed mutagenesis of DNA fragments cloned into M13 vectors.
    Methods Enzymol. 1983;100:468-500 PMID: 6225933
  11. Complete nucleotide sequence of the structural gene for colicin A, a gene translated at non-uniform rate.
    J Mol Biol. 1983 Oct 25;170(2):271-85 PMID: 6313941
  12. Nucleotide sequence of promoter, operator and amino-terminal region of caa, the structural gene of colicin A.
    EMBO J. 1983;2(5):787-9 PMID: 6641715
  13. Plasmid ColE3 specifies a lysis protein.
    J Bacteriol. 1984 Feb;157(2):582-90 PMID: 6319368
  14. Genetic analysis of ColN plasmid determinants for colicin production, release, and immunity.
    J Bacteriol. 1984 May;158(2):523-9 PMID: 6327609
  15. A colicin A fragment containing the receptor binding domain can be directed to the periplasmic space in E. coli through gene fusion.
    FEBS Lett. 1984 Jul 9;172(2):183-8 PMID: 6378656
  16. Colicins are not transiently accumulated in the periplasmic space before release from colicinogenic cells.
    Biol Cell. 1984;51(1):79-86 PMID: 6237702
  17. The use of double mutants to detect structural changes in the active site of the tyrosyl-tRNA synthetase (Bacillus stearothermophilus).
    Cell. 1984 Oct;38(3):835-40 PMID: 6488318
  18. Different base/base mismatches are corrected with different efficiencies by the methyl-directed DNA mismatch-repair system of E. coli.
    Cell. 1984 Oct;38(3):879-87 PMID: 6386179
  19. Lysis protein encoded by plasmid ColA-CA31. Gene sequence and export.
    Mol Gen Genet. 1985;199(1):95-100 PMID: 3889552
  20. Improved oligonucleotide site-directed mutagenesis using M13 vectors.
    Nucleic Acids Res. 1985 Jun 25;13(12):4431-43 PMID: 2989795
  21. pH-dependent membrane fusion is promoted by various colicins.
    EMBO J. 1985 Oct;4(10):2469-74 PMID: 3902468
  22. Secondary structure of the pore-forming colicin A and its C-terminal fragment. Experimental fact and structure prediction.
    Eur J Biochem. 1985 Nov 4;152(3):681-9 PMID: 4054129
  23. Effect of base substitutions in the colicin E1 gene on colicin E1 export and bacteriocin activity.
    Mol Gen Genet. 1986 Jan;202(1):24-9 PMID: 3007934
  24. The promoters of the genes for colicin production, release and immunity in the ColA plasmid: effects of convergent transcription and Lex A protein.
    Nucleic Acids Res. 1986 Mar 25;14(6):2621-36 PMID: 2421251
  25. A molecular, genetic and immunological approach to the functioning of colicin A, a pore-forming protein.
    J Mol Biol. 1986 Feb 5;187(3):449-59 PMID: 2422387
  26. Isolation and crystallization of bacterial porin.
    Methods Enzymol. 1986;125:309-28 PMID: 2423843
  27. Purification and molecular properties of a new colicin.
    Eur J Biochem. 1979 Jun 1;96(3):519-24 PMID: 380984
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1987-03-00
Pages
1152-6
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC304384
Subset
IM
Databases
GENBANK
M15691
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]