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PMID: 25005482 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Review

Mobile DNA elements in the generation of diversity and complexity in the brain.

Nature reviews. Neuroscience ·Vol. 15 ·No. 8 ·2014-08-00 ·Pages 497-506

Erwin JA, Marchetto MC, Gage FH

Abstract

Mobile elements are DNA sequences that can change their position (retrotranspose) within the genome. Although its biological function is largely unappreciated, DNA derived from mobile elements comprises nearly half of the human genome. It has long been thought that neuronal genomes are invariable; however, recent studies have demonstrated that mobile elements actively retrotranspose during neurogenesis, thereby creating genomic diversity between neurons. In addition, mounting data demonstrate that mobile elements are misregulated in certain neurological disorders, including Rett syndrome and schizophrenia.

MeSH Terms
Brain/physiology DNA Transposable Elements Genome, Human Humans Neurons/physiology Retroelements Rett Syndrome/genetics Schizophrenia/genetics
Chemicals
DNA Transposable Elements Retroelements
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Erwin Jennifer A
Salk Institute for Biological Studies, Laboratory of Genetics, 10010 North Torrey Pines Road, La Jolla, California 92037, USA.
Marchetto Maria C
Salk Institute for Biological Studies, Laboratory of Genetics, 10010 North Torrey Pines Road, La Jolla, California 92037, USA.
Gage Fred H
Salk Institute for Biological Studies, Laboratory of Genetics, 10010 North Torrey Pines Road, La Jolla, California 92037, USA.
References (79)
79 references, click to expand
  1. L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells.
    Nat Struct Mol Biol. 2006 Sep;13(9):763-71 PMID: 16936727
  2. Global transcriptional and translational repression in human-embryonic-stem-cell-derived Rett syndrome neurons.
    Cell Stem Cell. 2013 Oct 3;13(4):446-58 PMID: 24094325
  3. All y'all need to know 'bout retroelements in cancer.
    Semin Cancer Biol. 2010 Aug;20(4):200-10 PMID: 20600922
  4. A de novo Alu insertion results in neurofibromatosis type 1.
    Nature. 1991 Oct 31;353(6347):864-6 PMID: 1719426
  5. Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition.
    Nature. 2005 Jun 16;435(7044):903-10 PMID: 15959507
  6. A novel active L1 retrotransposon subfamily in the mouse.
    Genome Res. 2001 Oct;11(10):1677-85 PMID: 11591644
  7. Increased l1 retrotransposition in the neuronal genome in schizophrenia.
    Neuron. 2014 Jan 22;81(2):306-13 PMID: 24389010
  8. A comprehensive map of mobile element insertion polymorphisms in humans.
    PLoS Genet. 2011 Aug;7(8):e1002236 PMID: 21876680
  9. MIWI2 is essential for spermatogenesis and repression of transposons in the mouse male germline.
    Dev Cell. 2007 Apr;12(4):503-14 PMID: 17395546
  10. Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man.
    Nature. 1988 Mar 10;332(6160):164-6 PMID: 2831458
  11. RNAi-dependent and independent control of LINE1 accumulation and mobility in mouse embryonic stem cells.
    PLoS Genet. 2013 Nov;9(11):e1003791 PMID: 24244175
  12. Insulator and Ovo proteins determine the frequency and specificity of insertion of the gypsy retrotransposon in Drosophila melanogaster.
    Genetics. 2008 Nov;180(3):1367-78 PMID: 18791225
  13. DNA repair mediated by endonuclease-independent LINE-1 retrotransposition.
    Nat Genet. 2002 Jun;31(2):159-65 PMID: 12006980
  14. L1 retrotransposition in neurons is modulated by MeCP2.
    Nature. 2010 Nov 18;468(7322):443-6 PMID: 21085180
  15. High frequency retrotransposition in cultured mammalian cells.
    Cell. 1996 Nov 29;87(5):917-27 PMID: 8945518
  16. The human LINE-1 retrotransposon creates DNA double-strand breaks.
    J Mol Biol. 2006 Apr 14;357(5):1383-93 PMID: 16490214
  17. A YY1-binding site is required for accurate human LINE-1 transcription initiation.
    Nucleic Acids Res. 2004 Jul 22;32(13):3846-55 PMID: 15272086
  18. LINE-1 retrotransposons: mediators of somatic variation in neuronal genomes?
    Trends Neurosci. 2010 Aug;33(8):345-54 PMID: 20471112
  19. Activation of transposable elements during aging and neuronal decline in Drosophila.
    Nat Neurosci. 2013 May;16(5):529-31 PMID: 23563579
  20. Human LINE-1 retrotransposon induces DNA damage and apoptosis in cancer cells.
    Cancer Cell Int. 2006 May 02;6:13 PMID: 16670018
  21. Cellular inhibitors of long interspersed element 1 and Alu retrotransposition.
    Proc Natl Acad Sci U S A. 2006 Jun 6;103(23):8780-5 PMID: 16728505
  22. Aneuploid neurons are functionally active and integrated into brain circuitry.
    Proc Natl Acad Sci U S A. 2005 Apr 26;102(17):6143-7 PMID: 15837924
  23. The necessary junk: new functions for transposable elements.
    Hum Mol Genet. 2007 Oct 15;16 Spec No. 2:R159-67 PMID: 17911158
  24. Differential L1 regulation in pluripotent stem cells of humans and apes.
    Nature. 2013 Nov 28;503(7477):525-529 PMID: 24153179
  25. Rates and patterns of great ape retrotransposition.
    Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13457-62 PMID: 23884656
  26. A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
    Mol Cell. 2008 Sep 26;31(6):785-99 PMID: 18922463
  27. LINE-1 retrotransposition activity in human genomes.
    Cell. 2010 Jun 25;141(7):1159-70 PMID: 20602998
  28. Ataxia telangiectasia mutated (ATM) modulates long interspersed element-1 (L1) retrotransposition in human neural stem cells.
    Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20382-7 PMID: 22159035
  29. Amygdala transcriptome and cellular mechanisms underlying stress-enhanced fear learning in a rat model of posttraumatic stress disorder.
    Neuropsychopharmacology. 2010 May;35(6):1402-11 PMID: 20147889
  30. Generation of neuronal variability and complexity.
    Nature. 2006 Jun 29;441(7097):1087-93 PMID: 16810244
  31. Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition.
    Cell. 1996 Nov 29;87(5):905-16 PMID: 8945517
  32. Multiple fates of L1 retrotransposition intermediates in cultured human cells.
    Mol Cell Biol. 2005 Sep;25(17):7780-95 PMID: 16107723
  33. Methyl-CpG-binding protein 2 represses LINE-1 expression and retrotransposition but not Alu transcription.
    Nucleic Acids Res. 2001 Nov 1;29(21):4493-501 PMID: 11691937
  34. MOV10 RNA helicase is a potent inhibitor of retrotransposition in cells.
    PLoS Genet. 2012;8(10):e1002941 PMID: 23093941
  35. The impact of retrotransposons on human genome evolution.
    Nat Rev Genet. 2009 Oct;10(10):691-703 PMID: 19763152
  36. Somatic retrotransposition alters the genetic landscape of the human brain.
    Nature. 2011 Oct 30;479(7374):534-7 PMID: 22037309
  37. Members of the SRY family regulate the human LINE retrotransposons.
    Nucleic Acids Res. 2000 Jan 15;28(2):411-5 PMID: 10606637
  38. Mosaic copy number variation in human neurons.
    Science. 2013 Nov 1;342(6158):632-7 PMID: 24179226
  39. Intrinsic restriction activity by AID/APOBEC family of enzymes against the mobility of retroelements.
    Mob Genet Elements. 2011 Sep;1(3):197-202 PMID: 22479686
  40. Genomic deletions created upon LINE-1 retrotransposition.
    Cell. 2002 Aug 9;110(3):315-25 PMID: 12176319
  41. TDP-43 regulates its mRNA levels through a negative feedback loop.
    EMBO J. 2011 Jan 19;30(2):277-88 PMID: 21131904
  42. Acute stress and hippocampal histone H3 lysine 9 trimethylation, a retrotransposon silencing response.
    Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17657-62 PMID: 23043114
  43. The Microprocessor controls the activity of mammalian retrotransposons.
    Nat Struct Mol Biol. 2013 Oct;20(10):1173-81 PMID: 23995758
  44. Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing.
    Science. 2009 May 29;324(5931):1210-3 PMID: 19478186
  45. Characterizing the RNA targets and position-dependent splicing regulation by TDP-43.
    Nat Neurosci. 2011 Apr;14(4):452-8 PMID: 21358640
  46. Genetic evidence that the non-homologous end-joining repair pathway is involved in LINE retrotransposition.
    PLoS Genet. 2009 Apr;5(4):e1000461 PMID: 19390601
  47. LINE-1 retrotransposition in the nervous system.
    Annu Rev Cell Dev Biol. 2012;28:555-73 PMID: 23057747
  48. Partial reversal of Rett Syndrome-like symptoms in MeCP2 mutant mice.
    Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):2029-34 PMID: 19208815
  49. Ribonucleoprotein particles with LINE-1 RNA in mouse embryonal carcinoma cells.
    Mol Cell Biol. 1991 Sep;11(9):4804-7 PMID: 1715025
  50. Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43.
    Nat Neurosci. 2011 Apr;14(4):459-68 PMID: 21358643
  51. Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2.
    Nat Genet. 1999 Oct;23(2):185-8 PMID: 10508514
  52. Mobile element scanning (ME-Scan) by targeted high-throughput sequencing.
    BMC Genomics. 2010 Jun 30;11:410 PMID: 20591181
  53. Environmental influence on L1 retrotransposons in the adult hippocampus.
    Hippocampus. 2009 Oct;19(10):1002-7 PMID: 19771587
  54. Transposable elements in TDP-43-mediated neurodegenerative disorders.
    PLoS One. 2012;7(9):e44099 PMID: 22957047
  55. LINE-mediated retrotransposition of marked Alu sequences.
    Nat Genet. 2003 Sep;35(1):41-8 PMID: 12897783
  56. High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes.
    Genome Res. 2010 Sep;20(9):1262-70 PMID: 20488934
  57. Origin and evolution of retroelements based upon their reverse transcriptase sequences.
    EMBO J. 1990 Oct;9(10):3353-62 PMID: 1698615
  58. Expression of MeCP2 in postmitotic neurons rescues Rett syndrome in mice.
    Proc Natl Acad Sci U S A. 2004 Apr 20;101(16):6033-8 PMID: 15069197
  59. Chromosomal variation in neurons of the developing and adult mammalian nervous system.
    Proc Natl Acad Sci U S A. 2001 Nov 6;98(23):13361-6 PMID: 11698687
  60. The role of MeCP2 in the brain.
    Annu Rev Cell Dev Biol. 2011;27:631-52 PMID: 21721946
  61. Alu elements: know the SINEs.
    Genome Biol. 2011 Dec 28;12(12):236 PMID: 22204421
  62. Chromosome organization and genic expression.
    Cold Spring Harb Symp Quant Biol. 1951;16:13-47 PMID: 14942727
  63. Single-neuron sequencing analysis of L1 retrotransposition and somatic mutation in the human brain.
    Cell. 2012 Oct 26;151(3):483-96 PMID: 23101622
  64. Epigenetic control of gene expression in the alcoholic brain.
    Alcohol Res. 2013;35(1):69-76 PMID: 24313166
  65. ATM and ATR: networking cellular responses to DNA damage.
    Curr Opin Genet Dev. 2001 Feb;11(1):71-7 PMID: 11163154
  66. Wild-type microglia arrest pathology in a mouse model of Rett syndrome.
    Nature. 2012 Mar 18;484(7392):105-9 PMID: 22425995
  67. Initial sequencing and analysis of the human genome.
    Nature. 2001 Feb 15;409(6822):860-921 PMID: 11237011
  68. Endonuclease-independent LINE-1 retrotransposition at mammalian telomeres.
    Nature. 2007 Mar 8;446(7132):208-12 PMID: 17344853
  69. Novel PAX6 binding sites in the human genome and the role of repetitive elements in the evolution of gene regulation.
    Genome Res. 2002 Nov;12(11):1716-22 PMID: 12421758
  70. The significance of responses of the genome to challenge.
    Science. 1984 Nov 16;226(4676):792-801 PMID: 15739260
  71. L1 retrotransposition in human neural progenitor cells.
    Nature. 2009 Aug 27;460(7259):1127-31 PMID: 19657334
  72. The role of transposable elements in health and diseases of the central nervous system.
    J Neurosci. 2013 Nov 6;33(45):17577-86 PMID: 24198348
  73. Reverse transcriptase encoded by a human transposable element.
    Science. 1991 Dec 20;254(5039):1808-10 PMID: 1722352
  74. Transposition-driven genomic heterogeneity in the Drosophila brain.
    Science. 2013 Apr 5;340(6128):91-5 PMID: 23559253
  75. Natural mutagenesis of human genomes by endogenous retrotransposons.
    Cell. 2010 Jun 25;141(7):1253-61 PMID: 20603005
  76. Wnt-mediated activation of NeuroD1 and retro-elements during adult neurogenesis.
    Nat Neurosci. 2009 Sep;12(9):1097-105 PMID: 19701198
  77. Retrotransposition of marked SVA elements by human L1s in cultured cells.
    Hum Mol Genet. 2011 Sep 1;20(17):3386-400 PMID: 21636526
  78. An important role for RUNX3 in human L1 transcription and retrotransposition.
    Nucleic Acids Res. 2003 Aug 15;31(16):4929-40 PMID: 12907736
  79. Gene coexpression networks in human brain identify epigenetic modifications in alcohol dependence.
    J Neurosci. 2012 Feb 1;32(5):1884-97 PMID: 22302827
Article Info
Journal
Nature reviews. Neuroscience
Abbr.
Nat Rev Neurosci
ISSN
1471-0048
Published
2014-08-00
Epub
2014-00-09
Pages
497-506
Language
English
Region
England
NLM ID
100962781
PMCID
PMC4443810
Subset
IM
Grants
NIMH NIH HHS · R01 MH095741 · United States
NIMH NIH HHS · TR01 MH095741 · United States
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