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PMID: 25186113 已发表 · ppublish 英语

The complete plastid genome sequence of Eustrephus latifolius (Asparagaceae: Lomandroideae).

Kim Hyoung Tae, Kim Jung Sung, Kim Joo-Hwan

摘要

The complete chloroplast (cp) genome sequence of Eustrephus latifolius was firstly determined in subfamily Lomandriodeae of family Asparagaceae. It was 159,736 bp and contained a large single copy region (82,403 bp) and a small single copy region (13,607 bp) which were separated by two inverted repeat regions (31,863 bp). In total, 132 genes were identified and they were consisted of 83 coding genes, 8 rRNA genes, 38 tRNA genes, 3 pseudogenes. rpl23 and clpP were pseudogenes due to sequence deletions. Among 23 genes containing introns, rps12 and ycf3 contained two introns and the rest had just one intron. The intact ycf68 was identified within an intron of trnI-GAU. The amino acid sequence was almost identical with Phoenix dactylifera in Aracales. Ycf1 of E. latifolius was completely located in IR. It was similar to cp genome structure of Lemna minor, Spirodela polyrhiza, Wolffiella lingulata, Wolffia australiana in Alismatales.

关键词
Asparagaceae Eustrephus latifolius plastid genome
文献信息
期刊
Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis
期刊简称
Mitochondrial DNA A DNA Mapp Seq Anal
ISSN
2470-1408
发表日期
2016-10-12
收录日期
2015-12-16
更新日期
2016-11-10
语言
英语
国家/地区
England
NLM ID
101679980
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