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PMID: 26173844 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Innovative genomic collaboration using the GENESIS (GEM.app) platform.

Human mutation ·Vol. 36 ·No. 10 ·2015-10-00 ·Pages 950-6

Gonzalez M, Falk MJ, Gai X, Postrel R, Schüle R, Zuchner S

Abstract

Next-generation sequencing has led to an unparalleled pace of Mendelian disease gene discovery in recent years. To address the challenges of analysis and sharing of large datasets, we had previously introduced the collaborative web-based GEM.app software [Gonzalez et al., ]. Here, we are presenting the results of using GEM.app over nearly 3 years and introducing the next generation of this platform. First, GEM.app has been renamed to GENESIS since it is now part of "The Genesis Project" (501c3), a not-for-profit foundation that is committed to providing the best technology to enable research scientists and to connecting patients and clinicians to genomic information. Second, GENESIS (GEM.app) has grown to nearly 600 registered users from 44 countries, who have collectively achieved 62 gene identifications or published studies that have expanded phenotype/genotype correlations. Our concept of user-driven data sharing and matchmaking is now the main cause for gene discoveries within GENESIS. In many of these findings, researchers from across the globe have been connected, which gave rise to the genetic evidence needed to successfully pinpoint-specific gene mutations that explained patients' disease. Here, we present an overview of the various novel insights that have been made possible through the data-sharing capabilities of GENESIS/GEM.app.

Keywords
Mendelian disease data sharing exome matchmaker exchange next-generation sequencing
MeSH Terms
Computational Biology/methods Databases, Genetic Genetic Predisposition to Disease/genetics Genetic Variation Humans Information Dissemination/methods Phenotype Rare Diseases/genetics Software User-Computer Interface Web Browser
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Gonzalez Michael
The Genesis Project Inc, Miami, Florida, 33136.
Falk Marni J
Division of Human Genetics, Department of Pediatrics, The Children's Hospital of Philadelphia and University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, 19104.
Gai Xiaowu
Massachusetts Eye and Ear Infirmary, Harvard Medical School, Boston, Massachusetts.
Postrel Richard
The Genesis Project Inc, Miami, Florida, 33136.
Schüle Rebecca
Center for Neurology and Hertie-Institute for Clinical Brain Research, University of Tübingen, Tübingen, 72076, Germany. | German Center for Neurodegenerative Diseases, Tübingen, 72076, Germany. | Dr. John T. Macdonald Foundation, Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida, 33136.
Zuchner Stephan
Dr. John T. Macdonald Foundation, Department of Human Genetics and John P. Hussman Institute for Human Genomics, University of Miami Miller School of Medicine, Miami, Florida, 33136.
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9 references, click to expand
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Article Info
Journal
Human mutation
Abbr.
Hum Mutat
ISSN
1098-1004
Published
2015-10-00
Epub
2015-00-12
Pages
950-6
Language
English
Region
United States
NLM ID
9215429
PMCID
PMC4682547
Subset
IM
Grants
NHGRI NIH HHS · U41-HG006834 · United States
NINDS NIH HHS · U54 NS065712 · United States
NHGRI NIH HHS · U41 HG006834 · United States
NINDS NIH HHS · U54 NS078059 · United States
NINDS NIH HHS · U54-NS078059 · United States
NINDS NIH HHS · U54NS065712 · United States
NICHD NIH HHS · U54 HD086984 · United States
NINDS NIH HHS · 5R01NS072248 · United States
NINDS NIH HHS · R01NS075764 · United States
NINDS NIH HHS · R01 NS072248 · United States
NINDS NIH HHS · R01 NS075764 · United States
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