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PMID: 26220891 Published · ppublish English Journal Article Research Support, N.I.H., Extramural

GeneMatcher: a matching tool for connecting investigators with an interest in the same gene.

Human mutation ·Vol. 36 ·No. 10 ·2015-10-00 ·Pages 928-30

Sobreira N, Schiettecatte F, Valle D, Hamosh A

Abstract

Here, we describe an overview and update on GeneMatcher (http://www.genematcher.org), a freely accessible Web-based tool developed as part of the Baylor-Hopkins Center for Mendelian Genomics. We created GeneMatcher with the goal of identifying additional individuals with rare phenotypes who had variants in the same candidate disease gene. We also wanted to facilitate connections to basic scientists working on orthologous genes in model systems with the goal of connecting their work to human Mendelian phenotypes. Meeting these goals will enhance the identification of novel Mendelian genes. Launched in September, 2013, GeneMatcher now has 2,178 candidate genes from 486 submitters spread across 38 countries entered in the database (June 1, 2015). GeneMatcher is also part of the Matchmaker Exchange (http://matchmakerexchange.org/) with an Application Programing Interface enabling submitters to query other databases of genetic variants and phenotypes without having to create accounts and data entries in multiple systems.

Keywords
Matchmaker Exchange Mendelian disease next-generation sequencing variant analysis whole exome sequencing whole genome sequencing
MeSH Terms
Computational Biology/methods Databases, Genetic Genetic Predisposition to Disease/genetics Genetic Variation Humans Information Dissemination/methods Phenotype Rare Diseases/genetics Software User-Computer Interface Web Browser
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Sobreira Nara
Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland.
Schiettecatte François
FS Consulting, Salem, Massachusetts.
Valle David
Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland.
Hamosh Ada
Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland.
References (5)
5 references, click to expand
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Article Info
Journal
Human mutation
Abbr.
Hum Mutat
ISSN
1098-1004
Published
2015-10-00
Epub
2015-00-13
Pages
928-30
Language
English
Region
United States
NLM ID
9215429
PMCID
PMC4833888
Subset
IM
Grants
NHGRI NIH HHS · U54 HG006542 · United States
NHGRI NIH HHS · 1U54HG006542 · United States
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