Abstract
Here, we describe an overview and update on GeneMatcher (http://www.genematcher.org), a freely accessible Web-based tool developed as part of the Baylor-Hopkins Center for Mendelian Genomics. We created GeneMatcher with the goal of identifying additional individuals with rare phenotypes who had variants in the same candidate disease gene. We also wanted to facilitate connections to basic scientists working on orthologous genes in model systems with the goal of connecting their work to human Mendelian phenotypes. Meeting these goals will enhance the identification of novel Mendelian genes. Launched in September, 2013, GeneMatcher now has 2,178 candidate genes from 486 submitters spread across 38 countries entered in the database (June 1, 2015). GeneMatcher is also part of the Matchmaker Exchange (http://matchmakerexchange.org/) with an Application Programing Interface enabling submitters to query other databases of genetic variants and phenotypes without having to create accounts and data entries in multiple systems.
Keywords
Matchmaker Exchange
Mendelian disease
next-generation sequencing
variant analysis
whole exome sequencing
whole genome sequencing
MeSH Terms
Computational Biology/methods
Databases, Genetic
Genetic Predisposition to Disease/genetics
Genetic Variation
Humans
Information Dissemination/methods
Phenotype
Rare Diseases/genetics
Software
User-Computer Interface
Web Browser
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Sobreira Nara
Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland.
Schiettecatte François
FS Consulting, Salem, Massachusetts.
Valle David
Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland.
Hamosh Ada
Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland.
References (5)
5 references, click to expand
-
PhenoDB: a new web-based tool for the collection, storage, and analysis of phenotypic features.
Hum Mutat. 2013 Apr;34(4):566-71
PMID: 23378291
-
The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data.
Nucleic Acids Res. 2014 Jan;42(Database issue):D966-74
PMID: 24217912
-
Molecular findings among patients referred for clinical whole-exome sequencing.
JAMA. 2014 Nov 12;312(18):1870-9
PMID: 25326635
-
New tools for Mendelian disease gene identification: PhenoDB variant analysis module; and GeneMatcher, a web-based tool for linking investigators with an interest in the same gene.
Hum Mutat. 2015 Apr;36(4):425-31
PMID: 25684268
-
Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders.
Genome Res. 2015 Jul;25(7):948-57
PMID: 25917818